Supercomputer
If there are any additional papers that have not been included in the above list, please contact us at the e-mail address below. Thank you.
- Published Papers List in 2014
- Published Papers List in 2013
- Published Papers List in 2012
- Published Papers List in 2011
- Published Papers List in 2010
- Published Papers List in 2009
- Published Papers List in 2008
- Published Papers List before 2008
Published Papers List in 2014
Author | Title | Journal/Book |
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Suzuki M, Makinoshima H, Matsumoto S, Suzuki A, Mimaki S, Matsushima K, Yoh K, Goto K, Suzuki Y, Ishii G, Ochiai A, Tsuta K, Shibata T, Kohno T, Esumi H, Tsuchihara K | Identification of a lung adenocarcinoma cell line with CCDC6-RET fusion gene and the effect of RET inhibitors in vitro and in vivo | Cancer Sci. 2013 Jul;104(7):896-903. doi: 10.1111/cas.12175. Epub 2013 May 12 ![]() |
Imamachi N, Tani H, Mizutani R, Imamura K, Irie T, Suzuki Y, Akimitsu N | BRIC-seq: a genome-wide approach for determining RNA stability in mammalian cells | Methods. 2014 May 1;67(1):55-63. doi: 10.1016/j.ymeth.2013.07.014. Epub 2013 Jul 17 ![]() |
Suzuki A, Mimaki S, Yamane Y, Kawase A, Matsushima K, Suzuki M, Goto K, Sugano S, Esumi H, Suzuki Y, Tsuchihara K | Identification and characterization of cancer mutations in Japanese lung adenocarcinoma without sequencing of normal tissue counterparts | PLoS One. 2013 Sep 12;8(9):e73484. doi: 10.1371/journal.pone.0073484. eCollection 2013 ![]() |
Sakamoto T, Weng JS, Hara T, Yoshino S, Kozuka-Hata H, Oyama M, Seiki M | Hypoxia-inducible factor 1 regulation through cross talk between mTOR and MT1-MMP | Mol Cell Biol. 2014 Jan;34(1):30-42. doi: 10.1128/MCB.01169-13. Epub 2013 Oct 28 ![]() |
Kato A, Tsuda S, Liu Z, Kozuka-Hata H, Oyama M, Kawaguchi Y | Herpes simplex virus 1 protein kinase Us3 phosphorylates viral dUTPase and regulates its catalytic activity in infected cells | J Virol. 2014 Jan;88(1):655-66. doi: 10.1128/JVI.02710-13. Epub 2013 Oct 30 ![]() |
Sugai A, Sato H, Hagiwara K, Kozuka-Hata H, Oyama M, Yoneda M, Kai C | Newly identified minor phosphorylation site threonine-279 of measles virus nucleoprotein is a prerequisite for nucleocapsid formation | J Virol. 2014 Jan;88(2):1140-9. doi: 10.1128/JVI.01718-13. Epub 2013 Nov 6 ![]() |
Nasuno T, Mimaki S, Okamoto M, Esumi H, Tsuchihara K | Effect of a poly(ADP-ribose) polymerase-1 inhibitor against esophageal squamous cell carcinoma cell lines | Cancer Sci. 2014 Feb;105(2):202-10. doi: 10.1111/cas.12322. Epub 2013 Dec 5 ![]() |
Aihara K, Mukasa A, Gotoh K, Saito K, Nagae G, Tsuji S, Tatsuno K, Yamamoto S, Takayanagi S, Narita Y, Shibui S, Aburatani H, Saito N | H3F3A K27M mutations in thalamic gliomas from young adult patients | Neuro Oncol. 2014 Jan;16(1):140-6. doi: 10.1093/neuonc/not144. Epub 2013 Nov 26 ![]() |
Johnson BE, Mazor T, Hong C, Barnes M, Aihara K, McLean CY, Fouse SD, Yamamoto S, Ueda H, Tatsuno K, Asthana S, Jalbert LE, Nelson SJ, Bollen AW, Gustafson WC, Charron E, Weiss WA, Smirnov IV, Song JS, Olshen AB, Cha S, Zhao Y, Moore RA, Mungall AJ, Jones SJ, Hirst M, Marra MA, Saito N, Aburatani H, Mukasa A, Berger MS, Chang SM, Taylor BS, Costello JF | Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma | Science. 2014 Jan 10;343(6167):189-93. doi: 10.1126/science.1239947. Epub 2013 Dec 12 ![]() |
Sugimachi K, Niida A, Yamamoto K, Shimamura T, Imoto S, Iinuma H, Shinden Y, Eguchi H, Sudo T, Watanabe M, Tanaka J, Kudo S, Hase K, Kusunoki M, Yamada K, Shimada Y, Sugihara K, Maehara Y, Miyano S, Mori M, Mimori K | Allelic imbalance at an 8q24 oncogenic SNP is involved in activating MYC in human colorectal cancer | Ann Surg Oncol. 2014 Dec;21 Suppl 4:S515-21. doi: 10.1245/s10434-013-3468-6. Epub 2014 Jan 6 ![]() |
Matsuoka K, Asano Y, Higo S, Tsukamoto O, Yan Y, Yamazaki S, Matsuzaki T, Kioka H, Kato H, Uno Y, Asakura M, Asanuma H, Minamino T, Aburatani H, Kitakaze M, Komuro I, Takashima S | Noninvasive and quantitative live imaging reveals a potential stress-responsive enhancer in the failing heart | FASEB J. 2014 Apr;28(4):1870-9. doi: 10.1096/fj.13-245522. Epub 2014 Jan 3 ![]() |
Hosono N, Makishima H, Jerez A, Yoshida K, Przychodzen B, McMahon S, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Sanada M, Gomez-Segui I, Verma AK, McDevitt MA, Sekeres MA, Ogawa S, Maciejewski JP | Recurrent genetic defects on chromosome 7q in myeloid neoplasms | Leukemia. 2014 Jun;28(6):1348-51. doi: 10.1038/leu.2014.25. Epub 2014 Jan 16 ![]() |
Nishiura H, Ejima K, Mizumoto K, Nakaoka S, Inaba H, Imoto S, Yamaguchi R, Saito MM | Cost-effective length and timing of school closure during an influenza pandemic depend on the severity | Theor Biol Med Model. 2014 Jan 21;11:5. doi: 10.1186/1742-4682-11-5 ![]() |
Zhang B, Jia WH, Matsuo K, Shin A, Xiang YB, Matsuda K, Jee SH, Kim DH, Cheah PY, Ren Z, Cai Q, Long J, Shi J, Wen W, Yang G, Ji BT, Pan ZZ, Matsuda F, Gao YT, Oh JH, Ahn YO, Kubo M, Thean LF, Park EJ, Li HL, Park JW, Jo J, Jeong JY, Hosono S, Nakamura Y, Shu XO, Zeng YX, Zheng W | Genome-wide association study identifies a new SMAD7 risk variant associated with colorectal cancer risk in East Asians | Int J Cancer. 2014 Aug 15;135(4):948-55. doi: 10.1002/ijc.28733. Epub 2014 Jan 29 ![]() |
Elzawahry A, Patil A, Kumagai Y, Suzuki Y, Nakai K | Innate immunity interactome dynamics | Gene Regul Syst Bio. 2014 Jan 6;8:1-15. doi: 10.4137/GRSB.S12850. eCollection 2014 ![]() |
Naka-Kaneda H, Nakamura S, Igarashi M, Aoi H, Kanki H, Tsuyama J, Tsutsumi S, Aburatani H, Shimazaki T, Okano H | The miR-17/106-p38 axis is a key regulator of the neurogenic-to-gliogenic transition in developing neural stem/progenitor cells | Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):1604-9. doi: 10.1073/pnas.1315567111. Epub 2014 Jan 13 ![]() |
Kihara R, Nagata Y, Kiyoi H, Kato T, Yamamoto E, Suzuki K, Chen F, Asou N, Ohtake S, Miyawaki S, Miyazaki Y, Sakura T, Ozawa Y, Usui N, Kanamori H, Kiguchi T, Imai K, Uike N, Kimura F, Kitamura K, Nakaseko C, Onizuka M, Takeshita A, Ishida F, Suzushima H, Kato Y, Miwa H, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Ogawa S, Naoe T | Comprehensive analysis of genetic alterations and their prognostic impacts in adult acute myeloid leukemia patients | Leukemia. 2014 Aug;28(8):1586-95. doi: 10.1038/leu.2014.55. Epub 2014 Feb 3 ![]() |
Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim JD, Wang Y, Wu H, Kano Y, Ono H, Bono H, Kocbek S, Aerts J, Akune Y, Antezana E, Arakawa K, Aranda B, Baran J, Bolleman J, Bonnal RJ, Buttigieg PL, Campbell MP, Chen YA, Chiba H, Cock PJ, Cohen KB, Constantin A, Duck G, Dumontier M, Fujisawa T, Fujiwara T, Goto N, Hoehndorf R, Igarashi Y, Itaya H, Ito M, Iwasaki W, Kalaa M, Katoda T, Kim T, Kokubu A, Komiyama Y, Kotera M, Laibe C, Lapp H, Lutteke T, Marshall MS, Mori T, Mori H, Morita M, Murakami K, Nakao M, Narimatsu H, Nishide H, Nishimura Y, Nystrom-Persson J, Ogishima S, Okamura Y, Okuda S, Oshita K, Packer NH, Prins P, Ranzinger R, Rocca-Serra P, Sansone S, Sawaki H, Shin SH, Splendiani A, Strozzi F, Tadaka S, Toukach P, Uchiyama I, Umezaki M, Vos R, Whetzel PL, Yamada I, Yamasaki C, Yamashita R, York WS, Zmasek CM, Kawamoto S, Takagi T | BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains | J Biomed Semantics. 2014 Feb 5;5(1):5. doi: 10.1186/2041-1480-5-5 ![]() |
Kashiyama T, Oda K, Ikeda Y, Shiose Y, Hirota Y, Inaba K, Makii C, Kurikawa R, Miyasaka A, Koso T, Fukuda T, Tanikawa M, Shoji K, Sone K, Arimoto T, Wada-Hiraike O, Kawana K, Nakagawa S, Matsuda K, McCormick F, Aburatani H, Yano T, Osuga Y, Fujii T | Antitumor activity and induction of TP53-dependent apoptosis toward ovarian clear cell adenocarcinoma by the dual PI3K/mTOR inhibitor DS-7423 | PLoS One. 2014 Feb 4;9(2):e87220. doi: 10.1371/journal.pone.0087220. eCollection 2014 ![]() |
Arai E, Sakamoto H, Ichikawa H, Totsuka H, Chiku S, Gotoh M, Mori T, Nakatani T, Ohnami S, Nakagawa T, Fujimoto H, Wang L, Aburatani H, Yoshida T, Kanai Y | Multilayer-omics analysis of renal cell carcinoma, including the whole exome, methylome and transcriptome | Int J Cancer. 2014 Sep 15;135(6):1330-42. doi: 10.1002/ijc.28768. Epub 2014 May 2 ![]() |
Imamura K, Imamachi N, Akizuki G, Kumakura M, Kawaguchi A, Nagata K, Kato A, Kawaguchi Y, Sato H, Yoneda M, Kai C, Yada T, Suzuki Y, Yamada T, Ozawa T, Kaneki K, Inoue T, Kobayashi M, Kodama T, Wada Y, Sekimizu K, Akimitsu N | Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli | Mol Cell. 2014 Feb 6;53(3):393-406. doi: 10.1016/j.molcel.2014.01.009 ![]() |
Matsunawa M, Yamamoto R, Sanada M, Sato-Otsubo A, Shiozawa Y, Yoshida K, Otsu M, Shiraishi Y, Miyano S, Isono K, Koseki H, Nakauchi H, Ogawa S | Haploinsufficiency of Sf3b1 leads to compromised stem cell function but not to myelodysplasia | Leukemia. 2014 Sep;28(9):1844-50. doi: 10.1038/leu.2014.73. Epub 2014 Feb 18 ![]() |
Lin J, Deng Z, Tanikawa C, Shuin T, Miki T, Matsuda K, Nakamura Y | Downregulation of the tumor suppressor HSPB7, involved in the p53 pathway, in renal cell carcinoma by hypermethylation | Int J Oncol. 2014 May;44(5):1490-8. doi: 10.3892/ijo.2014.2314. Epub 2014 Feb 27 ![]() |
Sharma A, Dehzangi A, Lyons J, Imoto S, Miyano S, Nakai K, Patil A | Evaluation of sequence features from intrinsically disordered regions for the estimation of protein function | PLoS One. 2014 Feb 24;9(2):e89890. doi: 10.1371/journal.pone.0089890. eCollection 2014 ![]() |
Tajima N, Sato S, Maruyama F, Kurokawa K, Ohta H, Tabata S, Sekine K, Moriyama T, Sato N | Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum | J Plant Res. 2014 May;127(3):389-97. doi: 10.1007/s10265-014-0627-1. Epub 2014 Mar 5 ![]() |
Hayashi A, Yamauchi N, Shibahara J, Kimura H, Morikawa T, Ishikawa S, Nagae G, Nishi A, Sakamoto Y, Kokudo N, Aburatani H, Fukayama M | Concurrent activation of acetylation and tri-methylation of H3K27 in a subset of hepatocellular carcinoma with aggressive behavior | PLoS One. 2014 Mar 10;9(3):e91330. doi: 10.1371/journal.pone.0091330. eCollection 2014 ![]() |
Hasegawa S, Imai K, Yoshida K, Okuno Y, Muramatsu H, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Kojima S, Ogawa S, Morio T, Mizutani S, Takagi M | Whole-exome sequence analysis of ataxia telangiectasia-like phenotype | J Neurol Sci. 2014 May 15;340(1-2):86-90. doi: 10.1016/j.jns.2014.02.033. Epub 2014 Mar 4 ![]() |
Yukawa M, Akiyama T, Franke V, Mise N, Isagawa T, Suzuki Y, Suzuki MG, Vlahovicek K, Abe K, Aburatani H, Aoki F | Genome-wide analysis of the chromatin composition of histone H2A and H3 variants in mouse embryonic stem cells | PLoS One. 2014 Mar 21;9(3):e92689. doi: 10.1371/journal.pone.0092689. eCollection 2014 ![]() |
Seki M, Yoshida K, Shiraishi Y, Shimamura T, Sato Y, Nishimura R, Okuno Y, Chiba K, Tanaka H, Kato K, Kato M, Hanada R, Nomura Y, Park MJ, Ishida T, Oka A, Igarashi T, Miyano S, Hayashi Y, Ogawa S, Takita J | Biallelic DICER1 mutations in sporadic pleuropulmonary blastoma | Cancer Res. 2014 May 15;74(10):2742-9. doi: 10.1158/0008-5472.CAN-13-2470. Epub 2014 Mar 27 ![]() |
Seki M, Yoshida K, Shiraishi Y, Shimamura T, Sato Y, Nishimura R, Okuno Y, Chiba K, Tanaka H, Kato K, Kato M, Hanada R, Nomura Y, Park MJ, Ishida T, Oka A, Igarashi T, Miyano S, Hayashi Y, Ogawa S, Takita J | Biallelic DICER1 mutations in sporadic pleuropulmonary blastoma | Cancer Res. 2014 May 15;74(10):2742-9. doi: 10.1158/0008-5472.CAN-13-2470. Epub 2014 Mar 27 ![]() |
Park SJ, Umemoto T, Saito-Adachi M, Shiratsuchi Y, Yamato M, Nakai K | Computational promoter modeling identifies the modes of transcriptional regulation in hematopoietic stem cells | PLoS One. 2014 Apr 7;9(4):e93853. doi: 10.1371/journal.pone.0093853. eCollection 2014 ![]() |
Furuta Y, Namba-Fukuyo H, Shibata TF, Nishiyama T, Shigenobu S, Suzuki Y, Sugano S, Hasebe M, Kobayashi I | Methylome diversification through changes in DNA methyltransferase sequence specificity | PLoS Genet. 2014 Apr 10;10(4):e1004272. doi: 10.1371/journal.pgen.1004272. eCollection 2014 ![]() |
Takahashi R, Nagayama S, Furu M, Kajita Y, Jin Y, Kato T, Imoto S, Sakai Y, Toguchida J | AFAP1L1, a novel associating partner with vinculin, modulates cellular morphology and motility, and promotes the progression of colorectal cancers | Cancer Med. 2014 Aug;3(4):759-74. doi: 10.1002/cam4.237. Epub 2014 Apr 10 ![]() |
Maruzuru Y, Shindo K, Liu Z, Oyama M, Kozuka-Hata H, Arii J, Kato A, Kawaguchi Y | Role of herpes simplex virus 1 immediate early protein ICP22 in viral nuclear egress | J Virol. 2014 Jul;88(13):7445-54. doi: 10.1128/JVI.01057-14. Epub 2014 Apr 16 ![]() |
Seki M, Masaki H, Arauchi T, Nakauchi H, Sugano S, Suzuki Y | A comparison of the rest complex binding patterns in embryonic stem cells and epiblast stem cells | PLoS One. 2014 Apr 21;9(4):e95374. doi: 10.1371/journal.pone.0095374. eCollection 2014 ![]() |
Kurtovic-Kozaric A, Przychodzen B, Singh J, Konarska MM, Clemente MJ, Otrock ZK, Nakashima M, Hsi ED, Yoshida K, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Ogawa S, Boultwood J, Makishima H, Maciejewski JP, Padgett RA | PRPF8 defects cause missplicing in myeloid malignancies | Leukemia. 2015 Jan;29(1):126-36. doi: 10.1038/leu.2014.144. Epub 2014 Apr 30 ![]() |
Migita O, Maehara K, Kamura H, Miyakoshi K, Tanaka M, Morokuma S, Fukushima K, Shimamoto T, Saito S, Sago H, Nishihama K, Abe K, Nakabayashi K, Umezawa A, Okamura K, Hata K | Compilation of copy number variants identified in phenotypically normal and parous Japanese women | J Hum Genet. 2014 Jun;59(6):326-31. doi: 10.1038/jhg.2014.27. Epub 2014 May 1 ![]() |
Maejima T, Inoue T, Kanki Y, Kohro T, Li G, Ohta Y, Kimura H, Kobayashi M, Taguchi A, Tsutsumi S, Iwanari H, Yamamoto S, Aruga H, Dong S, Stevens JF, Poh HM, Yamamoto K, Kawamura T, Mimura I, Suehiro J, Sugiyama A, Kaneki K, Shibata H, Yoshinaka Y, Doi T, Asanuma A, Tanabe S, Tanaka T, Minami T, Hamakubo T, Sakai J, Nozaki N, Aburatani H, Nangaku M, Ruan X, Tanabe H, Ruan Y, Ihara S, Endo A, Kodama T, Wada Y | Direct evidence for pitavastatin induced chromatin structure change in the KLF4 gene in endothelial cells | PLoS One. 2014 May 5;9(5):e96005. doi: 10.1371/journal.pone.0096005. eCollection 2014 ![]() |
Fujitomo T, Daigo Y, Matsuda K, Ueda K, Nakamura Y | Identification of a nuclear protein, LRRC42, involved in lung carcinogenesis | Int J Oncol. 2014 Jul;45(1):147-56. doi: 10.3892/ijo.2014.2418. Epub 2014 May 6 ![]() |
Kakiuchi M, Nishizawa T, Ueda H, Gotoh K, Tanaka A, Hayashi A, Yamamoto S, Tatsuno K, Katoh H, Watanabe Y, Ichimura T, Ushiku T, Funahashi S, Tateishi K, Wada I, Shimizu N, Nomura S, Koike K, Seto Y, Fukayama M, Aburatani H, Ishikawa S | Recurrent gain-of-function mutations of RHOA in diffuse-type gastric carcinoma | Nat Genet. 2014 Jun;46(6):583-7. doi: 10.1038/ng.2984. Epub 2014 May 11 ![]() |
Yamamoto Y, Miyamoto M, Tatsuda D, Kubo M, Nakagama H, Nakamura Y, Satoh H, Matsuda K, Watanabe T, Ohta T | A rare polymorphic variant of NBS1 reduces DNA repair activity and elevates chromosomal instability | Cancer Res. 2014 Jul 15;74(14):3707-15. doi: 10.1158/0008-5472.CAN-13-3037. Epub 2014 May 15 ![]() |
Zhang B, Jia WH, Matsuda K, Kweon SS, Matsuo K, Xiang YB, Shin A, Jee SH, Kim DH, Cai Q, Long J, Shi J, Wen W, Yang G, Zhang Y, Li C, Li B, Guo Y, Ren Z, Ji BT, Pan ZZ, Takahashi A, Shin MH, Matsuda F, Gao YT, Oh JH, Kim S, Ahn YO, Chan AT, Chang-Claude J, Slattery ML, Gruber SB, Schumacher FR, Stenzel SL, Casey G, Kim HR, Jeong JY, Park JW, Li HL, Hosono S, Cho SH, Kubo M, Shu XO, Zeng YX, Zheng W | Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk | Nat Genet. 2014 Jun;46(6):533-42. doi: 10.1038/ng.2985. Epub 2014 May 18 ![]() |
Sawada G, Takahashi Y, Niida A, Shimamura T, Kurashige J, Matsumura T, Ueo H, Uchi R, Takano Y, Ueda M, Hirata H, Sakimura S, Shinden Y, Eguchi H, Sudo T, Sugimachi K, Miyano S, Doki Y, Mori M, Mimori K | Loss of CDCP1 expression promotes invasiveness and poor prognosis in esophageal squamous cell carcinoma | Ann Surg Oncol. 2014 Dec;21 Suppl 4:S640-7. doi: 10.1245/s10434-014-3740-4. Epub 2014 May 22 ![]() |
Sato Y, Maekawa S, Ishii R, Sanada M, Morikawa T, Shiraishi Y, Yoshida K, Nagata Y, Sato-Otsubo A, Yoshizato T, Suzuki H, Shiozawa Y, Kataoka K, Kon A, Aoki K, Chiba K, Tanaka H, Kume H, Miyano S, Fukayama M, Nureki O, Homma Y, Ogawa S | Recurrent somatic mutations underlie corticotropin-independent Cushing's syndrome | Science. 2014 May 23;344(6186):917-20. doi: 10.1126/science.1252328 ![]() |
Arase M, Horiguchi K, Ehata S, Morikawa M, Tsutsumi S, Aburatani H, Miyazono K, Koinuma D | Transforming growth factor-β-induced lncRNA-Smad7 inhibits apoptosis of mouse breast cancer JygMC(A) cells | Cancer Sci. 2014 Aug;105(8):974-82. doi: 10.1111/cas.12454. Epub 2014 Jul 25 ![]() |
Li C, Nagasaki M, Ikeda E, Sekiya Y, Miyano S | CSML2SBML: a novel tool for converting quantitative biological pathway models from CSML into SBML | Biosystems. 2014 Jul;121:22-8. doi: 10.1016/j.biosystems.2014.05.004. Epub 2014 Jun 2 ![]() |
Arima C, Kajino T, Tamada Y, Imoto S, Shimada Y, Nakatochi M, Suzuki M, Isomura H, Yatabe Y, Yamaguchi T, Yanagisawa K, Miyano S, Takahashi T | Lung adenocarcinoma subtypes definable by lung development-related miRNA expression profiles in association with clinicopathologic features | Carcinogenesis. 2014 Oct;35(10):2224-31. doi: 10.1093/carcin/bgu127. Epub 2014 Jun 5 ![]() |
Arima C, Kajino T, Tamada Y, Imoto S, Shimada Y, Nakatochi M, Suzuki M, Isomura H, Yatabe Y, Yamaguchi T, Yanagisawa K, Miyano S, Takahashi T | Lung adenocarcinoma subtypes definable by lung development-related miRNA expression profiles in association with clinicopathologic features | Carcinogenesis. 2014 Oct;35(10):2224-31. doi: 10.1093/carcin/bgu127. Epub 2014 Jun 5 ![]() |
Hasegawa T, Nagasaki M, Yamaguchi R, Imoto S, Miyano S | An efficient method of exploring simulation models by assimilating literature and biological observational data | Biosystems. 2014 Jul;121:54-66. doi: 10.1016/j.biosystems.2014.06.001. Epub 2014 Jun 5 ![]() |
Hirokawa M, Morita H, Tajima T, Takahashi A, Ashikawa K, Miya F, Shigemizu D, Ozaki K, Sakata Y, Nakatani D, Suna S, Imai Y, Tanaka T, Tsunoda T, Matsuda K, Kadowaki T, Nakamura Y, Nagai R, Komuro I, Kubo M | A genome-wide association study identifies PLCL2 and AP3D1-DOT1L-SF3A2 as new susceptibility loci for myocardial infarction in Japanese | Eur J Hum Genet. 2015 Mar;23(3):374-80. doi: 10.1038/ejhg.2014.110. Epub 2014 Jun 11 ![]() |
Damm F, Mylonas E, Cosson A, Yoshida K, Della Valle V, Mouly E, Diop M, Scourzic L, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Kikushige Y, Davi F, Lambert J, Gautheret D, Merle-Beral H, Sutton L, Dessen P, Solary E, Akashi K, Vainchenker W, Mercher T, Droin N, Ogawa S, Nguyen-Khac F, Bernard OA | Acquired initiating mutations in early hematopoietic cells of CLL patients | Cancer Discov. 2014 Sep;4(9):1088-101. doi: 10.1158/2159-8290.CD-14-0104. Epub 2014 Jun 11 ![]() |
Maekawa S, Suzuki A, Sugano S, Suzuki Y | RNA sequencing: from sample preparation to analysis | Methods Mol Biol. 2014;1164:51-65. doi: 10.1007/978-1-4939-0805-9_6 ![]() |
Fujita A, Miyano S | A tutorial to identify nonlinear associations in gene expression time series data | Methods Mol Biol. 2014;1164:87-95. doi: 10.1007/978-1-4939-0805-9_8 ![]() |
Tokunaga T, Hirose O, Kawaguchi S, Toyoshima Y, Teramoto T, Ikebata H, Kuge S, Ishihara T, Iino Y, Yoshida R | Automated detection and tracking of many cells by using 4D live-cell imaging data | Bioinformatics. 2014 Jun 15;30(12):i43-51. doi: 10.1093/bioinformatics/btu271 ![]() |
Tanaka T, Tahara-Hanaoka S, Nabekura T, Ikeda K, Jiang S, Tsutsumi S, Inagaki T, Magoori K, Higurashi T, Takahashi H, Tachibana K, Tsurutani Y, Raza S, Anai M, Minami T, Wada Y, Yokote K, Doi T, Hamakubo T, Auwerx J, Gonzalez FJ, Nakajima A, Aburatani H, Naito M, Shibuya A, Kodama T, Sakai J | PPARβ/δ activation of CD300a controls intestinal immunity | Sci Rep. 2014 Jun 24;4:5412. doi: 10.1038/srep05412 ![]() |
Asahi H, Tolba ME, Tanabe M, Sugano S, Abe K, Kawamoto F | Perturbation of copper homeostasis is instrumental in early developmental arrest of intraerythrocytic Plasmodium falciparum | BMC Microbiol. 2014 Jun 24;14:167. doi: 10.1186/1471-2180-14-167 ![]() |
Yang Y, Matsuzaki M, Takahashi F, Qu L, Nozaki H | Phylogenomic analysis of "red" genes from two divergent species of the "green" secondary phototrophs, the chlorarachniophytes, suggests multiple horizontal gene transfers from the red lineage before the divergence of extant chlorarachniophytes | PLoS One. 2014 Jun 27;9(6):e101158. doi: 10.1371/journal.pone.0101158. eCollection 2014 ![]() |
Fujii H, Kato A, Mugitani M, Kashima Y, Oyama M, Kozuka-Hata H, Arii J, Kawaguchi Y | The UL12 protein of herpes simplex virus 1 is regulated by tyrosine phosphorylation | J Virol. 2014 Sep;88(18):10624-34. doi: 10.1128/JVI.01634-14. Epub 2014 Jul 2 ![]() |
Yasuoka Y, Suzuki Y, Takahashi S, Someya H, Sudou N, Haramoto Y, Cho KW, Asashima M, Sugano S, Taira M | Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification | Nat Commun. 2014 Jul 9;5:4322. doi: 10.1038/ncomms5322 ![]() |
Totoki Y, Yoshida A, Hosoda F, Nakamura H, Hama N, Ogura K, Yoshida A, Fujiwara T, Arai Y, Toguchida J, Tsuda H, Miyano S, Kawai A, Shibata T | Unique mutation portraits and frequent COL2A1 gene alteration in chondrosarcoma | Genome Res. 2014 Sep;24(9):1411-20. doi: 10.1101/gr.160598.113. Epub 2014 Jul 14 ![]() |
Firouzi S, Lopez Y, Suzuki Y, Nakai K, Sugano S, Yamochi T, Watanabe T | Development and validation of a new high-throughput method to investigate the clonality of HTLV-1-infected cells based on provirus integration sites | Genome Med. 2014 Jun 27;6(6):46. doi: 10.1186/gm568. eCollection 2014 ![]() |
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Kobayashi K, Masuda T, Tajima N, Wada H, Sato N | Molecular phylogeny and intricate evolutionary history of the three isofunctional enzymes involved in the oxidation of protoporphyrinogen IX | Genome Biol Evol. 2014 Aug;6(8):2141-55. doi: 10.1093/gbe/evu170 ![]() |
Hayashi T, Horiuchi A, Aburatani H, Ishiko O, Yaegashi N, Kanai Y, Zharhary D, Shiozawa T, Tonegawa S, Konishi I | Potential biomarker for human uterine leiomyosarcoma | J Clin Med Res. 2014 Oct;6(5):392-4. doi: 10.14740/jocmr1867e. Epub 2014 Jul 28 ![]() |
Umemura S, Mimaki S, Makinoshima H, Tada S, Ishii G, Ohmatsu H, Niho S, Yoh K, Matsumoto S, Takahashi A, Morise M, Nakamura Y, Ochiai A, Nagai K, Iwakawa R, Kohno T, Yokota J, Ohe Y, Esumi H, Tsuchihara K, Goto K | Therapeutic priority of the PI3K/AKT/mTOR pathway in small cell lung cancers as revealed by a comprehensive genomic analysis | J Thorac Oncol. 2014 Sep;9(9):1324-31. doi: 10.1097/JTO.0000000000000250 ![]() |
Usuyama N, Shiraishi Y, Sato Y, Kume H, Homma Y, Ogawa S, Miyano S, Imoto S | HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations | Bioinformatics. 2014 Dec 1;30(23):3302-9. doi: 10.1093/bioinformatics/btu537. Epub 2014 Aug 14 ![]() |
Yamagishi J, Wakaguri H, Yokoyama N, Yamashita R, Suzuki Y, Xuan X, Igarashi I | The Babesia bovis gene and promoter model: an update from full-length EST analysis | BMC Genomics. 2014 Aug 13;15:678. doi: 10.1186/1471-2164-15-678 ![]() |
Miyamoto M, Motooka D, Gotoh K, Imai T, Yoshitake K, Goto N, Iida T, Yasunaga T, Horii T, Arakawa K, Kasahara M, Nakamura S | Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes | BMC Genomics. 2014 Aug 21;15:699. doi: 10.1186/1471-2164-15-699 ![]() |
Suehiro J, Kanki Y, Makihara C, Schadler K, Miura M, Manabe Y, Aburatani H, Kodama T, Minami T | Genome-wide approaches reveal functional vascular endothelial growth factor (VEGF)-inducible nuclear factor of activated T cells (NFAT) c1 binding to angiogenesis-related genes in the endothelium | J Biol Chem. 2014 Oct 17;289(42):29044-59. doi: 10.1074/jbc.M114.555235. Epub 2014 Aug 25 ![]() |
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Miyata K, Miyata T, Nakabayashi K, Okamura K, Naito M, Kawai T, Takada S, Kato K, Miyamoto S, Hata K, Asahara H | DNA methylation analysis of human myoblasts during in vitro myogenic differentiation: de novo methylation of promoters of muscle-related genes and its involvement in transcriptional down-regulation | Hum Mol Genet. 2015 Jan 15;24(2):410-23. doi: 10.1093/hmg/ddu457. Epub 2014 Sep 4 ![]() |
Chiba K, Shiraishi Y, Nagata Y, Yoshida K, Imoto S, Ogawa S, Miyano S | Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data | Bioinformatics. 2015 Jan 1;31(1):116-8. doi: 10.1093/bioinformatics/btu593. Epub 2014 Sep 4 ![]() |
Awai K, Ohta H, Sato N | Oxygenic photosynthesis without galactolipids | Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):13571-5. doi: 10.1073/pnas.1403708111. Epub 2014 Sep 2 ![]() |
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Tagawa K, Homma H, Saito A, Fujita K, Chen X, Imoto S, Oka T, Ito H, Motoki K, Yoshida C, Hatsuta H, Murayama S, Iwatsubo T, Miyano S, Okazawa H | Comprehensive phosphoproteome analysis unravels the core signaling network that initiates the earliest synapse pathology in preclinical Alzheimer's disease brain | Hum Mol Genet. 2015 Jan 15;24(2):540-58. doi: 10.1093/hmg/ddu475. Epub 2014 Sep 17 ![]() |
Hasegawa T, Mori T, Yamaguchi R, Imoto S, Miyano S, Akutsu T | An efficient data assimilation schema for restoration and extension of gene regulatory networks using time-course observation data | J Comput Biol. 2014 Nov;21(11):785-98. doi: 10.1089/cmb.2014.0171. Epub 2014 Sep 22 ![]() |
Shen W, Clemente MJ, Hosono N, Yoshida K, Przychodzen B, Yoshizato T, Shiraishi Y, Miyano S, Ogawa S, Maciejewski JP, Makishima H | Deep sequencing reveals stepwise mutation acquisition in paroxysmal nocturnal hemoglobinuria | J Clin Invest. 2014 Oct;124(10):4529-38. doi: 10.1172/JCI74747. Epub 2014 Sep 17 ![]() |
Matsuda K, Takahashi A, Middlebrooks CD, Obara W, Nasu Y, Inoue K, Tamura K, Yamasaki I, Naya Y, Tanikawa C, Cui R, Figueroa JD, Silverman DT, Rothman N, Namiki M, Tomita Y, Nishiyama H, Kohri K, Deguchi T, Nakagawa M, Yokoyama M, Miki T, Kumon H, Fujioka T, Prokunina-Olsson L, Kubo M, Nakamura Y, Shuin T | Genome-wide association study identified SNP on 15q24 associated with bladder cancer risk in Japanese population | Hum Mol Genet. 2015 Feb 15;24(4):1177-84. doi: 10.1093/hmg/ddu512. Epub 2014 Oct 3 ![]() |
Takai H, Masuda K, Sato T, Sakaguchi Y, Suzuki T, Suzuki T, Koyama-Nasu R, Nasu-Nishimura Y, Katou Y, Ogawa H, Morishita Y, Kozuka-Hata H, Oyama M, Todo T, Ino Y, Mukasa A, Saito N, Toyoshima C, Shirahige K, Akiyama T | 5-Hydroxymethylcytosine plays a critical role in glioblastomagenesis by recruiting the CHTOP-methylosome complex | Cell Rep. 2014 Oct 9;9(1):48-60. doi: 10.1016/j.celrep.2014.08.071. Epub 2014 Oct 2 ![]() |
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Takayama K, Suzuki T, Tsutsumi S, Fujimura T, Takahashi S, Homma Y, Urano T, Aburatani H, Inoue S | Integrative analysis of FOXP1 function reveals a tumor-suppressive effect in prostate cancer | Mol Endocrinol. 2014 Dec;28(12):2012-24. doi: 10.1210/me.2014-1171 ![]() |
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Okamura Y, Aoki Y, Obayashi T, Tadaka S, Ito S, Narise T, Kinoshita K | COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems | Nucleic Acids Res. 2015 Jan 28;43(Database issue):D82-6. doi: 10.1093/nar/gku1163. Epub 2014 Nov 11 ![]() |
Sasaki H, Kurotaki D, Osato N, Sato H, Sasaki I, Koizumi S, Wang H, Kaneda C, Nishiyama A, Kaisho T, Aburatani H, Morse HC rd, Ozato K, Tamura T | Transcription factor IRF8 plays a critical role in the development of murine basophils and mast cells | Blood. 2015 Jan 8;125(2):358-69. doi: 10.1182/blood-2014-02-557983. Epub 2014 Nov 14 ![]() |
Hoshino A, Nomura K, Hamashima T, Isobe T, Seki M, Hiwatari M, Yoshida K, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Ogawa S, Takita J, Kanegane H | Aggressive transformation of anaplastic large cell lymphoma with increased number of ALK-translocated chromosomes | Int J Hematol. 2015 Feb;101(2):198-202. doi: 10.1007/s12185-014-1701-0. Epub 2014 Nov 22 ![]() |
Wang R, Yoshida K, Toki T, Sawada T, Uechi T, Okuno Y, Sato-Otsubo A, Kudo K, Kamimaki I, Kanezaki R, Shiraishi Y, Chiba K, Tanaka H, Terui K, Sato T, Iribe Y, Ohga S, Kuramitsu M, Hamaguchi I, Ohara A, Hara J, Goi K, Matsubara K, Koike K, Ishiguro A, Okamoto Y, Watanabe K, Kanno H, Kojima S, Miyano S, Kenmochi N, Ogawa S, Ito E | Loss of function mutations in RPL27 and RPS27 identified by whole-exome sequencing in Diamond-Blackfan anaemia | Br J Haematol. 2014 Nov 25. doi: 10.1111/bjh.13229. [Epub ahead of print] ![]() |
Kawashima-Goto S, Imamura T, Seki M, Kato M, Yoshida K, Sugimoto A, Kaneda D, Fujiki A, Miyachi M, Nakatani T, Osone S, Ishida H, Taki T, Takita J, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Ogawa S, Hosoi H | Identification of a homozygous JAK3 V674A mutation caused by acquired uniparental disomy in a relapsed early T-cell precursor ALL patient | Int J Hematol. 2014 Nov 28. [Epub ahead of print] ![]() |
Watanabe T, Kawakami E, Shoemaker JE, Lopes TJ, Matsuoka Y, Tomita Y, Kozuka-Hata H, Gorai T, Kuwahara T, Takeda E, Nagata A, Takano R, Kiso M, Yamashita M, Sakai-Tagawa Y, Katsura H, Nonaka N, Fujii H, Fujii K, Sugita Y, Noda T, Goto H, Fukuyama S, Watanabe S, Neumann G, Oyama M, Kitano H, Kawaoka Y | Influenza virus-host interactome screen as a platform for antiviral drug development | Cell Host Microbe. 2014 Dec 10;16(6):795-805. doi: 10.1016/j.chom.2014.11.002. Epub 2014 Nov 20 ![]() |
Patil A, Nakai K | TimeXNet: identifying active gene sub-networks using time-course gene expression profiles | BMC Syst Biol. 2014;8 Suppl 4:S2. doi: 10.1186/1752-0509-8-S4-S2. Epub 2014 Dec 8 ![]() |
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Ito H, Shiwaku H, Yoshida C, Homma H, Luo H, Chen X, Fujita K, Musante L, Fischer U, Frints SG, Romano C, Ikeuchi Y, Shimamura T, Imoto S, Miyano S, Muramatsu SI, Kawauchi T, Hoshino M, Sudol M, Arumughan A, Wanker EE, Rich T, Schwartz C, Matsuzaki F, Bonni A, Kalscheuer VM, Okazawa H | In utero gene therapy rescues microcephaly caused by Pqbp1-hypofunction in neural stem progenitor cells | Mol Psychiatry. 2014 Jul 29. doi: 10.1038/mp.2014.69. [Epub ahead of print] ![]() |
Barclay SS, Tamura T, Ito H, Fujita K, Tagawa K, Shimamura T, Katsuta A, Shiwaku H, Sone M, Imoto S, Miyano S, Okazawa H | Systems biology analysis of Drosophila in vivo screen data elucidates core networks for DNA damage repair in SCA1 | Hum Mol Genet. 2014 Mar 1;23(5):1345-64. doi: 10.1093/hmg/ddt524. Epub 2013 Oct 31 ![]() |
Sugii M, Kawano K, Faure A, Matsuno H | A Mathematical Analysis of the Behavior of Genetic Toggle Switch | The 29th International Technical Conference on Circuit/Systems Computers and Communications, 845-848, 2014 |
Tran VA, Hirose O, Saethang T, Nguyen LA, Dang XT, Le TK, Ngo DL, Gavrilov S, Kubo M, Yamada Y, Sato K | D-IMPACT: A Data Preprocessing Algorithm to Improve the Performance of Clustering | Journal of Software Engineering and Applications Vol.7 No.8, 639-654, 2014 |
Sugii M, Kawano K, Matsuno H | Extension of Genetic Toggle Switch with a Mathematical Analysis for Artificial Genetic Circuits | Proc. The German Conference on Bioinformatics, 110, 2014 |
Hase T, Kikuchi K, Ghosh S, Kitano H, Tanaka H | Identification of drug-target modules in the human protein protein interaction network | Artificial Life and Robotics Vol.19 Issue.4, 406-413, 2014 |
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Kawano S, Fujisawa H, Takada T, Shiroishi T | Sparse principal component regression with adaptive loading | arXiv:1402.6455 |
Ohtsuki T, Nariai N, Kojima K, Mimori T, Sato Y, Kawai Y, Yamaguchi-Kabata Y, Shibuya T, Nagasaki M | SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints | Lecture Notes in Computer Science Vol.8542, 208-219, 2014 |
内藤 雄樹 | 今日から使える!データベース・ウェブツール 達人になるための実践ガイド100 | 実験医学増刊号 Vol.32 No.20, 102-103, 2014 |
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