Supercomputer

Results Achieved by Using the Supercomputer (Published Papers)

If there are any additional papers that have not been included in the above list, please contact us at the e-mail address below. Thank you.
    

Published Papers List in 2014
Published Papers List in 2013
Published Papers List in 2012
Published Papers List in 2011
Published Papers List in 2010
Published Papers List in 2009
Published Papers List in 2008
Published Papers List before 2008

Published Papers List in 2014

AuthorTitleJournal/Book
Suzuki M, Makinoshima H, Matsumoto S, Suzuki A, Mimaki S, Matsushima K, Yoh K, Goto K, Suzuki Y, Ishii G, Ochiai A, Tsuta K, Shibata T, Kohno T, Esumi H, Tsuchihara K Identification of a lung adenocarcinoma cell line with CCDC6-RET fusion gene and the effect of RET inhibitors in vitro and in vivo Cancer Sci. 2013 Jul;104(7):896-903. doi: 10.1111/cas.12175. Epub 2013 May 12 pubmed
Imamachi N, Tani H, Mizutani R, Imamura K, Irie T, Suzuki Y, Akimitsu N BRIC-seq: a genome-wide approach for determining RNA stability in mammalian cells Methods. 2014 May 1;67(1):55-63. doi: 10.1016/j.ymeth.2013.07.014. Epub 2013 Jul 17 pubmed
Suzuki A, Mimaki S, Yamane Y, Kawase A, Matsushima K, Suzuki M, Goto K, Sugano S, Esumi H, Suzuki Y, Tsuchihara K Identification and characterization of cancer mutations in Japanese lung adenocarcinoma without sequencing of normal tissue counterparts PLoS One. 2013 Sep 12;8(9):e73484. doi: 10.1371/journal.pone.0073484. eCollection 2013 pubmed
Sakamoto T, Weng JS, Hara T, Yoshino S, Kozuka-Hata H, Oyama M, Seiki M Hypoxia-inducible factor 1 regulation through cross talk between mTOR and MT1-MMP Mol Cell Biol. 2014 Jan;34(1):30-42. doi: 10.1128/MCB.01169-13. Epub 2013 Oct 28 pubmed
Kato A, Tsuda S, Liu Z, Kozuka-Hata H, Oyama M, Kawaguchi Y Herpes simplex virus 1 protein kinase Us3 phosphorylates viral dUTPase and regulates its catalytic activity in infected cells J Virol. 2014 Jan;88(1):655-66. doi: 10.1128/JVI.02710-13. Epub 2013 Oct 30 pubmed
Sugai A, Sato H, Hagiwara K, Kozuka-Hata H, Oyama M, Yoneda M, Kai C Newly identified minor phosphorylation site threonine-279 of measles virus nucleoprotein is a prerequisite for nucleocapsid formation J Virol. 2014 Jan;88(2):1140-9. doi: 10.1128/JVI.01718-13. Epub 2013 Nov 6 pubmed
Nasuno T, Mimaki S, Okamoto M, Esumi H, Tsuchihara K Effect of a poly(ADP-ribose) polymerase-1 inhibitor against esophageal squamous cell carcinoma cell lines Cancer Sci. 2014 Feb;105(2):202-10. doi: 10.1111/cas.12322. Epub 2013 Dec 5 pubmed
Aihara K, Mukasa A, Gotoh K, Saito K, Nagae G, Tsuji S, Tatsuno K, Yamamoto S, Takayanagi S, Narita Y, Shibui S, Aburatani H, Saito N H3F3A K27M mutations in thalamic gliomas from young adult patients Neuro Oncol. 2014 Jan;16(1):140-6. doi: 10.1093/neuonc/not144. Epub 2013 Nov 26 pubmed
Johnson BE, Mazor T, Hong C, Barnes M, Aihara K, McLean CY, Fouse SD, Yamamoto S, Ueda H, Tatsuno K, Asthana S, Jalbert LE, Nelson SJ, Bollen AW, Gustafson WC, Charron E, Weiss WA, Smirnov IV, Song JS, Olshen AB, Cha S, Zhao Y, Moore RA, Mungall AJ, Jones SJ, Hirst M, Marra MA, Saito N, Aburatani H, Mukasa A, Berger MS, Chang SM, Taylor BS, Costello JF Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma Science. 2014 Jan 10;343(6167):189-93. doi: 10.1126/science.1239947. Epub 2013 Dec 12 pubmed
Sugimachi K, Niida A, Yamamoto K, Shimamura T, Imoto S, Iinuma H, Shinden Y, Eguchi H, Sudo T, Watanabe M, Tanaka J, Kudo S, Hase K, Kusunoki M, Yamada K, Shimada Y, Sugihara K, Maehara Y, Miyano S, Mori M, Mimori K Allelic imbalance at an 8q24 oncogenic SNP is involved in activating MYC in human colorectal cancer Ann Surg Oncol. 2014 Dec;21 Suppl 4:S515-21. doi: 10.1245/s10434-013-3468-6. Epub 2014 Jan 6 pubmed
Matsuoka K, Asano Y, Higo S, Tsukamoto O, Yan Y, Yamazaki S, Matsuzaki T, Kioka H, Kato H, Uno Y, Asakura M, Asanuma H, Minamino T, Aburatani H, Kitakaze M, Komuro I, Takashima S Noninvasive and quantitative live imaging reveals a potential stress-responsive enhancer in the failing heart FASEB J. 2014 Apr;28(4):1870-9. doi: 10.1096/fj.13-245522. Epub 2014 Jan 3 pubmed
Hosono N, Makishima H, Jerez A, Yoshida K, Przychodzen B, McMahon S, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Sanada M, Gomez-Segui I, Verma AK, McDevitt MA, Sekeres MA, Ogawa S, Maciejewski JP Recurrent genetic defects on chromosome 7q in myeloid neoplasms Leukemia. 2014 Jun;28(6):1348-51. doi: 10.1038/leu.2014.25. Epub 2014 Jan 16 pubmed
Nishiura H, Ejima K, Mizumoto K, Nakaoka S, Inaba H, Imoto S, Yamaguchi R, Saito MM Cost-effective length and timing of school closure during an influenza pandemic depend on the severity Theor Biol Med Model. 2014 Jan 21;11:5. doi: 10.1186/1742-4682-11-5 pubmed
Zhang B, Jia WH, Matsuo K, Shin A, Xiang YB, Matsuda K, Jee SH, Kim DH, Cheah PY, Ren Z, Cai Q, Long J, Shi J, Wen W, Yang G, Ji BT, Pan ZZ, Matsuda F, Gao YT, Oh JH, Ahn YO, Kubo M, Thean LF, Park EJ, Li HL, Park JW, Jo J, Jeong JY, Hosono S, Nakamura Y, Shu XO, Zeng YX, Zheng W Genome-wide association study identifies a new SMAD7 risk variant associated with colorectal cancer risk in East Asians Int J Cancer. 2014 Aug 15;135(4):948-55. doi: 10.1002/ijc.28733. Epub 2014 Jan 29 pubmed
Elzawahry A, Patil A, Kumagai Y, Suzuki Y, Nakai K Innate immunity interactome dynamics Gene Regul Syst Bio. 2014 Jan 6;8:1-15. doi: 10.4137/GRSB.S12850. eCollection 2014 pubmed
Naka-Kaneda H, Nakamura S, Igarashi M, Aoi H, Kanki H, Tsuyama J, Tsutsumi S, Aburatani H, Shimazaki T, Okano H The miR-17/106-p38 axis is a key regulator of the neurogenic-to-gliogenic transition in developing neural stem/progenitor cells Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):1604-9. doi: 10.1073/pnas.1315567111. Epub 2014 Jan 13 pubmed
Kihara R, Nagata Y, Kiyoi H, Kato T, Yamamoto E, Suzuki K, Chen F, Asou N, Ohtake S, Miyawaki S, Miyazaki Y, Sakura T, Ozawa Y, Usui N, Kanamori H, Kiguchi T, Imai K, Uike N, Kimura F, Kitamura K, Nakaseko C, Onizuka M, Takeshita A, Ishida F, Suzushima H, Kato Y, Miwa H, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Ogawa S, Naoe T Comprehensive analysis of genetic alterations and their prognostic impacts in adult acute myeloid leukemia patients Leukemia. 2014 Aug;28(8):1586-95. doi: 10.1038/leu.2014.55. Epub 2014 Feb 3 pubmed
Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim JD, Wang Y, Wu H, Kano Y, Ono H, Bono H, Kocbek S, Aerts J, Akune Y, Antezana E, Arakawa K, Aranda B, Baran J, Bolleman J, Bonnal RJ, Buttigieg PL, Campbell MP, Chen YA, Chiba H, Cock PJ, Cohen KB, Constantin A, Duck G, Dumontier M, Fujisawa T, Fujiwara T, Goto N, Hoehndorf R, Igarashi Y, Itaya H, Ito M, Iwasaki W, Kalaa M, Katoda T, Kim T, Kokubu A, Komiyama Y, Kotera M, Laibe C, Lapp H, Lutteke T, Marshall MS, Mori T, Mori H, Morita M, Murakami K, Nakao M, Narimatsu H, Nishide H, Nishimura Y, Nystrom-Persson J, Ogishima S, Okamura Y, Okuda S, Oshita K, Packer NH, Prins P, Ranzinger R, Rocca-Serra P, Sansone S, Sawaki H, Shin SH, Splendiani A, Strozzi F, Tadaka S, Toukach P, Uchiyama I, Umezaki M, Vos R, Whetzel PL, Yamada I, Yamasaki C, Yamashita R, York WS, Zmasek CM, Kawamoto S, Takagi T BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains J Biomed Semantics. 2014 Feb 5;5(1):5. doi: 10.1186/2041-1480-5-5 pubmed
Kashiyama T, Oda K, Ikeda Y, Shiose Y, Hirota Y, Inaba K, Makii C, Kurikawa R, Miyasaka A, Koso T, Fukuda T, Tanikawa M, Shoji K, Sone K, Arimoto T, Wada-Hiraike O, Kawana K, Nakagawa S, Matsuda K, McCormick F, Aburatani H, Yano T, Osuga Y, Fujii T Antitumor activity and induction of TP53-dependent apoptosis toward ovarian clear cell adenocarcinoma by the dual PI3K/mTOR inhibitor DS-7423 PLoS One. 2014 Feb 4;9(2):e87220. doi: 10.1371/journal.pone.0087220. eCollection 2014 pubmed
Arai E, Sakamoto H, Ichikawa H, Totsuka H, Chiku S, Gotoh M, Mori T, Nakatani T, Ohnami S, Nakagawa T, Fujimoto H, Wang L, Aburatani H, Yoshida T, Kanai Y Multilayer-omics analysis of renal cell carcinoma, including the whole exome, methylome and transcriptome Int J Cancer. 2014 Sep 15;135(6):1330-42. doi: 10.1002/ijc.28768. Epub 2014 May 2 pubmed
Imamura K, Imamachi N, Akizuki G, Kumakura M, Kawaguchi A, Nagata K, Kato A, Kawaguchi Y, Sato H, Yoneda M, Kai C, Yada T, Suzuki Y, Yamada T, Ozawa T, Kaneki K, Inoue T, Kobayashi M, Kodama T, Wada Y, Sekimizu K, Akimitsu N Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli Mol Cell. 2014 Feb 6;53(3):393-406. doi: 10.1016/j.molcel.2014.01.009 pubmed
Matsunawa M, Yamamoto R, Sanada M, Sato-Otsubo A, Shiozawa Y, Yoshida K, Otsu M, Shiraishi Y, Miyano S, Isono K, Koseki H, Nakauchi H, Ogawa S Haploinsufficiency of Sf3b1 leads to compromised stem cell function but not to myelodysplasia Leukemia. 2014 Sep;28(9):1844-50. doi: 10.1038/leu.2014.73. Epub 2014 Feb 18 pubmed
Lin J, Deng Z, Tanikawa C, Shuin T, Miki T, Matsuda K, Nakamura Y Downregulation of the tumor suppressor HSPB7, involved in the p53 pathway, in renal cell carcinoma by hypermethylation Int J Oncol. 2014 May;44(5):1490-8. doi: 10.3892/ijo.2014.2314. Epub 2014 Feb 27 pubmed
Sharma A, Dehzangi A, Lyons J, Imoto S, Miyano S, Nakai K, Patil A Evaluation of sequence features from intrinsically disordered regions for the estimation of protein function PLoS One. 2014 Feb 24;9(2):e89890. doi: 10.1371/journal.pone.0089890. eCollection 2014 pubmed
Tajima N, Sato S, Maruyama F, Kurokawa K, Ohta H, Tabata S, Sekine K, Moriyama T, Sato N Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum J Plant Res. 2014 May;127(3):389-97. doi: 10.1007/s10265-014-0627-1. Epub 2014 Mar 5 pubmed
Hayashi A, Yamauchi N, Shibahara J, Kimura H, Morikawa T, Ishikawa S, Nagae G, Nishi A, Sakamoto Y, Kokudo N, Aburatani H, Fukayama M Concurrent activation of acetylation and tri-methylation of H3K27 in a subset of hepatocellular carcinoma with aggressive behavior PLoS One. 2014 Mar 10;9(3):e91330. doi: 10.1371/journal.pone.0091330. eCollection 2014 pubmed
Hasegawa S, Imai K, Yoshida K, Okuno Y, Muramatsu H, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Kojima S, Ogawa S, Morio T, Mizutani S, Takagi M Whole-exome sequence analysis of ataxia telangiectasia-like phenotype J Neurol Sci. 2014 May 15;340(1-2):86-90. doi: 10.1016/j.jns.2014.02.033. Epub 2014 Mar 4 pubmed
Yukawa M, Akiyama T, Franke V, Mise N, Isagawa T, Suzuki Y, Suzuki MG, Vlahovicek K, Abe K, Aburatani H, Aoki F Genome-wide analysis of the chromatin composition of histone H2A and H3 variants in mouse embryonic stem cells PLoS One. 2014 Mar 21;9(3):e92689. doi: 10.1371/journal.pone.0092689. eCollection 2014 pubmed
Seki M, Yoshida K, Shiraishi Y, Shimamura T, Sato Y, Nishimura R, Okuno Y, Chiba K, Tanaka H, Kato K, Kato M, Hanada R, Nomura Y, Park MJ, Ishida T, Oka A, Igarashi T, Miyano S, Hayashi Y, Ogawa S, Takita J Biallelic DICER1 mutations in sporadic pleuropulmonary blastoma Cancer Res. 2014 May 15;74(10):2742-9. doi: 10.1158/0008-5472.CAN-13-2470. Epub 2014 Mar 27 pubmed
Seki M, Yoshida K, Shiraishi Y, Shimamura T, Sato Y, Nishimura R, Okuno Y, Chiba K, Tanaka H, Kato K, Kato M, Hanada R, Nomura Y, Park MJ, Ishida T, Oka A, Igarashi T, Miyano S, Hayashi Y, Ogawa S, Takita J Biallelic DICER1 mutations in sporadic pleuropulmonary blastoma Cancer Res. 2014 May 15;74(10):2742-9. doi: 10.1158/0008-5472.CAN-13-2470. Epub 2014 Mar 27 pubmed
Park SJ, Umemoto T, Saito-Adachi M, Shiratsuchi Y, Yamato M, Nakai K Computational promoter modeling identifies the modes of transcriptional regulation in hematopoietic stem cells PLoS One. 2014 Apr 7;9(4):e93853. doi: 10.1371/journal.pone.0093853. eCollection 2014 pubmed
Furuta Y, Namba-Fukuyo H, Shibata TF, Nishiyama T, Shigenobu S, Suzuki Y, Sugano S, Hasebe M, Kobayashi I Methylome diversification through changes in DNA methyltransferase sequence specificity PLoS Genet. 2014 Apr 10;10(4):e1004272. doi: 10.1371/journal.pgen.1004272. eCollection 2014 pubmed
Takahashi R, Nagayama S, Furu M, Kajita Y, Jin Y, Kato T, Imoto S, Sakai Y, Toguchida J AFAP1L1, a novel associating partner with vinculin, modulates cellular morphology and motility, and promotes the progression of colorectal cancers Cancer Med. 2014 Aug;3(4):759-74. doi: 10.1002/cam4.237. Epub 2014 Apr 10 pubmed
Maruzuru Y, Shindo K, Liu Z, Oyama M, Kozuka-Hata H, Arii J, Kato A, Kawaguchi Y Role of herpes simplex virus 1 immediate early protein ICP22 in viral nuclear egress J Virol. 2014 Jul;88(13):7445-54. doi: 10.1128/JVI.01057-14. Epub 2014 Apr 16 pubmed
Seki M, Masaki H, Arauchi T, Nakauchi H, Sugano S, Suzuki Y A comparison of the rest complex binding patterns in embryonic stem cells and epiblast stem cells PLoS One. 2014 Apr 21;9(4):e95374. doi: 10.1371/journal.pone.0095374. eCollection 2014 pubmed
Kurtovic-Kozaric A, Przychodzen B, Singh J, Konarska MM, Clemente MJ, Otrock ZK, Nakashima M, Hsi ED, Yoshida K, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Ogawa S, Boultwood J, Makishima H, Maciejewski JP, Padgett RA PRPF8 defects cause missplicing in myeloid malignancies Leukemia. 2015 Jan;29(1):126-36. doi: 10.1038/leu.2014.144. Epub 2014 Apr 30 pubmed
Migita O, Maehara K, Kamura H, Miyakoshi K, Tanaka M, Morokuma S, Fukushima K, Shimamoto T, Saito S, Sago H, Nishihama K, Abe K, Nakabayashi K, Umezawa A, Okamura K, Hata K Compilation of copy number variants identified in phenotypically normal and parous Japanese women J Hum Genet. 2014 Jun;59(6):326-31. doi: 10.1038/jhg.2014.27. Epub 2014 May 1 pubmed
Maejima T, Inoue T, Kanki Y, Kohro T, Li G, Ohta Y, Kimura H, Kobayashi M, Taguchi A, Tsutsumi S, Iwanari H, Yamamoto S, Aruga H, Dong S, Stevens JF, Poh HM, Yamamoto K, Kawamura T, Mimura I, Suehiro J, Sugiyama A, Kaneki K, Shibata H, Yoshinaka Y, Doi T, Asanuma A, Tanabe S, Tanaka T, Minami T, Hamakubo T, Sakai J, Nozaki N, Aburatani H, Nangaku M, Ruan X, Tanabe H, Ruan Y, Ihara S, Endo A, Kodama T, Wada Y Direct evidence for pitavastatin induced chromatin structure change in the KLF4 gene in endothelial cells PLoS One. 2014 May 5;9(5):e96005. doi: 10.1371/journal.pone.0096005. eCollection 2014 pubmed
Fujitomo T, Daigo Y, Matsuda K, Ueda K, Nakamura Y Identification of a nuclear protein, LRRC42, involved in lung carcinogenesis Int J Oncol. 2014 Jul;45(1):147-56. doi: 10.3892/ijo.2014.2418. Epub 2014 May 6 pubmed
Kakiuchi M, Nishizawa T, Ueda H, Gotoh K, Tanaka A, Hayashi A, Yamamoto S, Tatsuno K, Katoh H, Watanabe Y, Ichimura T, Ushiku T, Funahashi S, Tateishi K, Wada I, Shimizu N, Nomura S, Koike K, Seto Y, Fukayama M, Aburatani H, Ishikawa S Recurrent gain-of-function mutations of RHOA in diffuse-type gastric carcinoma Nat Genet. 2014 Jun;46(6):583-7. doi: 10.1038/ng.2984. Epub 2014 May 11 pubmed
Yamamoto Y, Miyamoto M, Tatsuda D, Kubo M, Nakagama H, Nakamura Y, Satoh H, Matsuda K, Watanabe T, Ohta T A rare polymorphic variant of NBS1 reduces DNA repair activity and elevates chromosomal instability Cancer Res. 2014 Jul 15;74(14):3707-15. doi: 10.1158/0008-5472.CAN-13-3037. Epub 2014 May 15 pubmed
Zhang B, Jia WH, Matsuda K, Kweon SS, Matsuo K, Xiang YB, Shin A, Jee SH, Kim DH, Cai Q, Long J, Shi J, Wen W, Yang G, Zhang Y, Li C, Li B, Guo Y, Ren Z, Ji BT, Pan ZZ, Takahashi A, Shin MH, Matsuda F, Gao YT, Oh JH, Kim S, Ahn YO, Chan AT, Chang-Claude J, Slattery ML, Gruber SB, Schumacher FR, Stenzel SL, Casey G, Kim HR, Jeong JY, Park JW, Li HL, Hosono S, Cho SH, Kubo M, Shu XO, Zeng YX, Zheng W Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk Nat Genet. 2014 Jun;46(6):533-42. doi: 10.1038/ng.2985. Epub 2014 May 18 pubmed
Sawada G, Takahashi Y, Niida A, Shimamura T, Kurashige J, Matsumura T, Ueo H, Uchi R, Takano Y, Ueda M, Hirata H, Sakimura S, Shinden Y, Eguchi H, Sudo T, Sugimachi K, Miyano S, Doki Y, Mori M, Mimori K Loss of CDCP1 expression promotes invasiveness and poor prognosis in esophageal squamous cell carcinoma Ann Surg Oncol. 2014 Dec;21 Suppl 4:S640-7. doi: 10.1245/s10434-014-3740-4. Epub 2014 May 22 pubmed
Sato Y, Maekawa S, Ishii R, Sanada M, Morikawa T, Shiraishi Y, Yoshida K, Nagata Y, Sato-Otsubo A, Yoshizato T, Suzuki H, Shiozawa Y, Kataoka K, Kon A, Aoki K, Chiba K, Tanaka H, Kume H, Miyano S, Fukayama M, Nureki O, Homma Y, Ogawa S Recurrent somatic mutations underlie corticotropin-independent Cushing's syndrome Science. 2014 May 23;344(6186):917-20. doi: 10.1126/science.1252328 pubmed
Arase M, Horiguchi K, Ehata S, Morikawa M, Tsutsumi S, Aburatani H, Miyazono K, Koinuma D Transforming growth factor-β-induced lncRNA-Smad7 inhibits apoptosis of mouse breast cancer JygMC(A) cells Cancer Sci. 2014 Aug;105(8):974-82. doi: 10.1111/cas.12454. Epub 2014 Jul 25 pubmed
Li C, Nagasaki M, Ikeda E, Sekiya Y, Miyano S CSML2SBML: a novel tool for converting quantitative biological pathway models from CSML into SBML Biosystems. 2014 Jul;121:22-8. doi: 10.1016/j.biosystems.2014.05.004. Epub 2014 Jun 2 pubmed
Arima C, Kajino T, Tamada Y, Imoto S, Shimada Y, Nakatochi M, Suzuki M, Isomura H, Yatabe Y, Yamaguchi T, Yanagisawa K, Miyano S, Takahashi T Lung adenocarcinoma subtypes definable by lung development-related miRNA expression profiles in association with clinicopathologic features Carcinogenesis. 2014 Oct;35(10):2224-31. doi: 10.1093/carcin/bgu127. Epub 2014 Jun 5 pubmed
Arima C, Kajino T, Tamada Y, Imoto S, Shimada Y, Nakatochi M, Suzuki M, Isomura H, Yatabe Y, Yamaguchi T, Yanagisawa K, Miyano S, Takahashi T Lung adenocarcinoma subtypes definable by lung development-related miRNA expression profiles in association with clinicopathologic features Carcinogenesis. 2014 Oct;35(10):2224-31. doi: 10.1093/carcin/bgu127. Epub 2014 Jun 5 pubmed
Hasegawa T, Nagasaki M, Yamaguchi R, Imoto S, Miyano S An efficient method of exploring simulation models by assimilating literature and biological observational data Biosystems. 2014 Jul;121:54-66. doi: 10.1016/j.biosystems.2014.06.001. Epub 2014 Jun 5 pubmed
Hirokawa M, Morita H, Tajima T, Takahashi A, Ashikawa K, Miya F, Shigemizu D, Ozaki K, Sakata Y, Nakatani D, Suna S, Imai Y, Tanaka T, Tsunoda T, Matsuda K, Kadowaki T, Nakamura Y, Nagai R, Komuro I, Kubo M A genome-wide association study identifies PLCL2 and AP3D1-DOT1L-SF3A2 as new susceptibility loci for myocardial infarction in Japanese Eur J Hum Genet. 2015 Mar;23(3):374-80. doi: 10.1038/ejhg.2014.110. Epub 2014 Jun 11 pubmed
Damm F, Mylonas E, Cosson A, Yoshida K, Della Valle V, Mouly E, Diop M, Scourzic L, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Kikushige Y, Davi F, Lambert J, Gautheret D, Merle-Beral H, Sutton L, Dessen P, Solary E, Akashi K, Vainchenker W, Mercher T, Droin N, Ogawa S, Nguyen-Khac F, Bernard OA Acquired initiating mutations in early hematopoietic cells of CLL patients Cancer Discov. 2014 Sep;4(9):1088-101. doi: 10.1158/2159-8290.CD-14-0104. Epub 2014 Jun 11 pubmed
Maekawa S, Suzuki A, Sugano S, Suzuki Y RNA sequencing: from sample preparation to analysis Methods Mol Biol. 2014;1164:51-65. doi: 10.1007/978-1-4939-0805-9_6 pubmed
Fujita A, Miyano S A tutorial to identify nonlinear associations in gene expression time series data Methods Mol Biol. 2014;1164:87-95. doi: 10.1007/978-1-4939-0805-9_8 pubmed
Tokunaga T, Hirose O, Kawaguchi S, Toyoshima Y, Teramoto T, Ikebata H, Kuge S, Ishihara T, Iino Y, Yoshida R Automated detection and tracking of many cells by using 4D live-cell imaging data Bioinformatics. 2014 Jun 15;30(12):i43-51. doi: 10.1093/bioinformatics/btu271 pubmed
Tanaka T, Tahara-Hanaoka S, Nabekura T, Ikeda K, Jiang S, Tsutsumi S, Inagaki T, Magoori K, Higurashi T, Takahashi H, Tachibana K, Tsurutani Y, Raza S, Anai M, Minami T, Wada Y, Yokote K, Doi T, Hamakubo T, Auwerx J, Gonzalez FJ, Nakajima A, Aburatani H, Naito M, Shibuya A, Kodama T, Sakai J PPARβ/δ activation of CD300a controls intestinal immunity Sci Rep. 2014 Jun 24;4:5412. doi: 10.1038/srep05412 pubmed
Asahi H, Tolba ME, Tanabe M, Sugano S, Abe K, Kawamoto F Perturbation of copper homeostasis is instrumental in early developmental arrest of intraerythrocytic Plasmodium falciparum BMC Microbiol. 2014 Jun 24;14:167. doi: 10.1186/1471-2180-14-167 pubmed
Yang Y, Matsuzaki M, Takahashi F, Qu L, Nozaki H Phylogenomic analysis of "red" genes from two divergent species of the "green" secondary phototrophs, the chlorarachniophytes, suggests multiple horizontal gene transfers from the red lineage before the divergence of extant chlorarachniophytes PLoS One. 2014 Jun 27;9(6):e101158. doi: 10.1371/journal.pone.0101158. eCollection 2014 pubmed
Fujii H, Kato A, Mugitani M, Kashima Y, Oyama M, Kozuka-Hata H, Arii J, Kawaguchi Y The UL12 protein of herpes simplex virus 1 is regulated by tyrosine phosphorylation J Virol. 2014 Sep;88(18):10624-34. doi: 10.1128/JVI.01634-14. Epub 2014 Jul 2 pubmed
Yasuoka Y, Suzuki Y, Takahashi S, Someya H, Sudou N, Haramoto Y, Cho KW, Asashima M, Sugano S, Taira M Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification Nat Commun. 2014 Jul 9;5:4322. doi: 10.1038/ncomms5322 pubmed
Totoki Y, Yoshida A, Hosoda F, Nakamura H, Hama N, Ogura K, Yoshida A, Fujiwara T, Arai Y, Toguchida J, Tsuda H, Miyano S, Kawai A, Shibata T Unique mutation portraits and frequent COL2A1 gene alteration in chondrosarcoma Genome Res. 2014 Sep;24(9):1411-20. doi: 10.1101/gr.160598.113. Epub 2014 Jul 14 pubmed
Firouzi S, Lopez Y, Suzuki Y, Nakai K, Sugano S, Yamochi T, Watanabe T Development and validation of a new high-throughput method to investigate the clonality of HTLV-1-infected cells based on provirus integration sites Genome Med. 2014 Jun 27;6(6):46. doi: 10.1186/gm568. eCollection 2014 pubmed
Cai Q, Zhang B, Sung H, Low SK, Kweon SS, Lu W, Shi J, Long J, Wen W, Choi JY, Noh DY, Shen CY, Matsuo K, Teo SH, Kim MK, Khoo US, Iwasaki M, Hartman M, Takahashi A, Ashikawa K, Matsuda K, Shin MH, Park MH, Zheng Y, Xiang YB, Ji BT, Park SK, Wu PE, Hsiung CN, Ito H, Kasuga Y, Kang P, Mariapun S, Ahn SH, Kang HS, Chan KY, Man EP, Iwata H, Tsugane S, Miao H, Liao J, Nakamura Y, Kubo M, Delahanty RJ, Zhang Y, Li B, Li C, Gao YT, Shu XO, Kang D, Zheng W Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32.1, 5q14.3 and 15q26.1 Nat Genet. 2014 Aug;46(8):886-90. doi: 10.1038/ng.3041. Epub 2014 Jul 20 pubmed
Isogaya K, Koinuma D, Tsutsumi S, Saito RA, Miyazawa K, Aburatani H, Miyazono K A Smad3 and TTF-1/NKX2-1 complex regulates Smad4-independent gene expression Cell Res. 2014 Aug;24(8):994-1008. doi: 10.1038/cr.2014.97. Epub 2014 Jul 25 pubmed
Keller MF, Reiner AP, Okada Y, van Rooij FJ, Johnson AD, Chen MH, Smith AV, Morris AP, Tanaka T, Ferrucci L, Zonderman AB, Lettre G, Harris T, Garcia M, Bandinelli S, Qayyum R, Yanek LR, Becker DM, Becker LC, Kooperberg C, Keating B, Reis J, Tang H, Boerwinkle E, Kamatani Y, Matsuda K, Kamatani N, Nakamura Y, Kubo M, Liu S, Dehghan A, Felix JF, Hofman A, Uitterlinden AG, van Duijn CM, Franco OH, Longo DL, Singleton AB, Psaty BM, Evans MK, Cupples LA, Rotter JI, O'Donnell CJ, Takahashi A, Wilson JG, Ganesh SK, Nalls MA Trans-ethnic meta-analysis of white blood cell phenotypes Hum Mol Genet. 2014 Dec 20;23(25):6944-60. doi: 10.1093/hmg/ddu401. Epub 2014 Aug 5 pubmed
Kobayashi K, Masuda T, Tajima N, Wada H, Sato N Molecular phylogeny and intricate evolutionary history of the three isofunctional enzymes involved in the oxidation of protoporphyrinogen IX Genome Biol Evol. 2014 Aug;6(8):2141-55. doi: 10.1093/gbe/evu170 pubmed
Hayashi T, Horiuchi A, Aburatani H, Ishiko O, Yaegashi N, Kanai Y, Zharhary D, Shiozawa T, Tonegawa S, Konishi I Potential biomarker for human uterine leiomyosarcoma J Clin Med Res. 2014 Oct;6(5):392-4. doi: 10.14740/jocmr1867e. Epub 2014 Jul 28 pubmed
Umemura S, Mimaki S, Makinoshima H, Tada S, Ishii G, Ohmatsu H, Niho S, Yoh K, Matsumoto S, Takahashi A, Morise M, Nakamura Y, Ochiai A, Nagai K, Iwakawa R, Kohno T, Yokota J, Ohe Y, Esumi H, Tsuchihara K, Goto K Therapeutic priority of the PI3K/AKT/mTOR pathway in small cell lung cancers as revealed by a comprehensive genomic analysis J Thorac Oncol. 2014 Sep;9(9):1324-31. doi: 10.1097/JTO.0000000000000250 pubmed
Usuyama N, Shiraishi Y, Sato Y, Kume H, Homma Y, Ogawa S, Miyano S, Imoto S HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations Bioinformatics. 2014 Dec 1;30(23):3302-9. doi: 10.1093/bioinformatics/btu537. Epub 2014 Aug 14 pubmed
Yamagishi J, Wakaguri H, Yokoyama N, Yamashita R, Suzuki Y, Xuan X, Igarashi I The Babesia bovis gene and promoter model: an update from full-length EST analysis BMC Genomics. 2014 Aug 13;15:678. doi: 10.1186/1471-2164-15-678 pubmed
Miyamoto M, Motooka D, Gotoh K, Imai T, Yoshitake K, Goto N, Iida T, Yasunaga T, Horii T, Arakawa K, Kasahara M, Nakamura S Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes BMC Genomics. 2014 Aug 21;15:699. doi: 10.1186/1471-2164-15-699 pubmed
Suehiro J, Kanki Y, Makihara C, Schadler K, Miura M, Manabe Y, Aburatani H, Kodama T, Minami T Genome-wide approaches reveal functional vascular endothelial growth factor (VEGF)-inducible nuclear factor of activated T cells (NFAT) c1 binding to angiogenesis-related genes in the endothelium J Biol Chem. 2014 Oct 17;289(42):29044-59. doi: 10.1074/jbc.M114.555235. Epub 2014 Aug 25 pubmed
Hasegawa T, Yamaguchi R, Nagasaki M, Miyano S, Imoto S Inference of gene regulatory networks incorporating multi-source biological knowledge via a state space model with L1 regularization PLoS One. 2014 Aug 27;9(8):e105942. doi: 10.1371/journal.pone.0105942. eCollection 2014 pubmed
Matsumoto H, Kiryu H Integrating dilution-based sequencing and population genotypes for single individual haplotyping BMC Genomics. 2014 Aug 28;15:733. doi: 10.1186/1471-2164-15-733 pubmed
Miyata K, Miyata T, Nakabayashi K, Okamura K, Naito M, Kawai T, Takada S, Kato K, Miyamoto S, Hata K, Asahara H DNA methylation analysis of human myoblasts during in vitro myogenic differentiation: de novo methylation of promoters of muscle-related genes and its involvement in transcriptional down-regulation Hum Mol Genet. 2015 Jan 15;24(2):410-23. doi: 10.1093/hmg/ddu457. Epub 2014 Sep 4 pubmed
Chiba K, Shiraishi Y, Nagata Y, Yoshida K, Imoto S, Ogawa S, Miyano S Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data Bioinformatics. 2015 Jan 1;31(1):116-8. doi: 10.1093/bioinformatics/btu593. Epub 2014 Sep 4 pubmed
Awai K, Ohta H, Sato N Oxygenic photosynthesis without galactolipids Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):13571-5. doi: 10.1073/pnas.1403708111. Epub 2014 Sep 2 pubmed
Matsushita N, Seno S, Takenaka Y, Matsuda H Metagenome fragment classification based on multiple motif-occurrence profiles PeerJ. 2014 Sep 4;2:e559. doi: 10.7717/peerj.559. eCollection 2014 pubmed
Deng Z, Matsuda K, Tanikawa C, Lin J, Furukawa Y, Hamamoto R, Nakamura Y Late Cornified Envelope Group I, a novel target of p53, regulates PRMT5 activity Neoplasia. 2014 Aug;16(8):656-64. doi: 10.1016/j.neo.2014.07.008 pubmed
Tagawa K, Homma H, Saito A, Fujita K, Chen X, Imoto S, Oka T, Ito H, Motoki K, Yoshida C, Hatsuta H, Murayama S, Iwatsubo T, Miyano S, Okazawa H Comprehensive phosphoproteome analysis unravels the core signaling network that initiates the earliest synapse pathology in preclinical Alzheimer's disease brain Hum Mol Genet. 2015 Jan 15;24(2):540-58. doi: 10.1093/hmg/ddu475. Epub 2014 Sep 17 pubmed
Hasegawa T, Mori T, Yamaguchi R, Imoto S, Miyano S, Akutsu T An efficient data assimilation schema for restoration and extension of gene regulatory networks using time-course observation data J Comput Biol. 2014 Nov;21(11):785-98. doi: 10.1089/cmb.2014.0171. Epub 2014 Sep 22 pubmed
Shen W, Clemente MJ, Hosono N, Yoshida K, Przychodzen B, Yoshizato T, Shiraishi Y, Miyano S, Ogawa S, Maciejewski JP, Makishima H Deep sequencing reveals stepwise mutation acquisition in paroxysmal nocturnal hemoglobinuria J Clin Invest. 2014 Oct;124(10):4529-38. doi: 10.1172/JCI74747. Epub 2014 Sep 17 pubmed
Matsuda K, Takahashi A, Middlebrooks CD, Obara W, Nasu Y, Inoue K, Tamura K, Yamasaki I, Naya Y, Tanikawa C, Cui R, Figueroa JD, Silverman DT, Rothman N, Namiki M, Tomita Y, Nishiyama H, Kohri K, Deguchi T, Nakagawa M, Yokoyama M, Miki T, Kumon H, Fujioka T, Prokunina-Olsson L, Kubo M, Nakamura Y, Shuin T Genome-wide association study identified SNP on 15q24 associated with bladder cancer risk in Japanese population Hum Mol Genet. 2015 Feb 15;24(4):1177-84. doi: 10.1093/hmg/ddu512. Epub 2014 Oct 3 pubmed
Takai H, Masuda K, Sato T, Sakaguchi Y, Suzuki T, Suzuki T, Koyama-Nasu R, Nasu-Nishimura Y, Katou Y, Ogawa H, Morishita Y, Kozuka-Hata H, Oyama M, Todo T, Ino Y, Mukasa A, Saito N, Toyoshima C, Shirahige K, Akiyama T 5-Hydroxymethylcytosine plays a critical role in glioblastomagenesis by recruiting the CHTOP-methylosome complex Cell Rep. 2014 Oct 9;9(1):48-60. doi: 10.1016/j.celrep.2014.08.071. Epub 2014 Oct 2 pubmed
Hayashi T, Horiuchi A, Sano K, Hiraoka N, Ichimura T, Sudo T, Ishiko O, Yaegashi N, Aburatani H, Konishi I Potential diagnostic biomarkers: differential expression of LMP2/β1i and cyclin B1 in human uterine leiomyosarcoma Tumori. 2014 Jul-Aug;100(4):99e-106e. doi: 10.1700/1636.17918 pubmed
Yap KL, Kiyotani K, Tamura K, Antic T, Jang M, Montoya M, Campanile A, Yew PY, Ganshert C, Fujioka T, Steinberg GD, O'Donnell PH, Nakamura Y Whole-exome sequencing of muscle-invasive bladder cancer identifies recurrent mutations of UNC5C and prognostic importance of DNA repair gene mutations on survival Clin Cancer Res. 2014 Dec 15;20(24):6605-17. doi: 10.1158/1078-0432.CCR-14-0257. Epub 2014 Oct 14 pubmed
Park H, Shimamura T, Miyano S, Imoto S Robust prediction of anti-cancer drug sensitivity and sensitivity-specific biomarker PLoS One. 2014 Oct 17;9(10):e108990. doi: 10.1371/journal.pone.0108990. eCollection 2014 pubmed
Takayama K, Suzuki T, Tsutsumi S, Fujimura T, Takahashi S, Homma Y, Urano T, Aburatani H, Inoue S Integrative analysis of FOXP1 function reveals a tumor-suppressive effect in prostate cancer Mol Endocrinol. 2014 Dec;28(12):2012-24. doi: 10.1210/me.2014-1171 pubmed
Park SJ, Shirahige K, Ohsugi M, Nakai K DBTMEE: a database of transcriptome in mouse early embryos Nucleic Acids Res. 2015 Jan 28;43(Database issue):D771-6. doi: 10.1093/nar/gku1001. Epub 2014 Oct 21 pubmed
Ohta M, Ashikawa T, Nozaki Y, Kozuka-Hata H, Goto H, Inagaki M, Oyama M, Kitagawa D Direct interaction of Plk4 with STIL ensures formation of a single procentriole per parental centriole Nat Commun. 2014 Oct 24;5:5267. doi: 10.1038/ncomms6267 pubmed
Totoki Y, Tatsuno K, Covington KR, Ueda H, Creighton CJ, Kato M, Tsuji S, Donehower LA, Slagle BL, Nakamura H, Yamamoto S, Shinbrot E, Hama N, Lehmkuhl M, Hosoda F, Arai Y, Walker K, Dahdouli M, Gotoh K, Nagae G, Gingras MC, Muzny DM, Ojima H, Shimada K, Midorikawa Y, Goss JA, Cotton R, Hayashi A, Shibahara J, Ishikawa S, Guiteau J, Tanaka M, Urushidate T, Ohashi S, Okada N, Doddapaneni H, Wang M, Zhu Y, Dinh H, Okusaka T, Kokudo N, Kosuge T, Takayama T, Fukayama M, Gibbs RA, Wheeler DA, Aburatani H, Shibata T Trans-ancestry mutational landscape of hepatocellular carcinoma genomes Nat Genet. 2014 Dec;46(12):1267-73. doi: 10.1038/ng.3126. Epub 2014 Nov 2 pubmed
Suzuki A, Wakaguri H, Yamashita R, Kawano S, Tsuchihara K, Sugano S, Suzuki Y, Nakai K DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data Nucleic Acids Res. 2015 Jan 28;43(Database issue):D87-91. doi: 10.1093/nar/gku1080. Epub 2014 Nov 5 pubmed
Suzuki A, Makinoshima H, Wakaguri H, Esumi H, Sugano S, Kohno T, Tsuchihara K, Suzuki Y Aberrant transcriptional regulations in cancers: genome, transcriptome and epigenome analysis of lung adenocarcinoma cell lines Nucleic Acids Res. 2014 Dec 16;42(22):13557-72. doi: 10.1093/nar/gku885. Epub 2014 Nov 6 pubmed
Okamura Y, Aoki Y, Obayashi T, Tadaka S, Ito S, Narise T, Kinoshita K COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems Nucleic Acids Res. 2015 Jan 28;43(Database issue):D82-6. doi: 10.1093/nar/gku1163. Epub 2014 Nov 11 pubmed
Sasaki H, Kurotaki D, Osato N, Sato H, Sasaki I, Koizumi S, Wang H, Kaneda C, Nishiyama A, Kaisho T, Aburatani H, Morse HC rd, Ozato K, Tamura T Transcription factor IRF8 plays a critical role in the development of murine basophils and mast cells Blood. 2015 Jan 8;125(2):358-69. doi: 10.1182/blood-2014-02-557983. Epub 2014 Nov 14 pubmed
Hoshino A, Nomura K, Hamashima T, Isobe T, Seki M, Hiwatari M, Yoshida K, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Ogawa S, Takita J, Kanegane H Aggressive transformation of anaplastic large cell lymphoma with increased number of ALK-translocated chromosomes Int J Hematol. 2015 Feb;101(2):198-202. doi: 10.1007/s12185-014-1701-0. Epub 2014 Nov 22 pubmed
Wang R, Yoshida K, Toki T, Sawada T, Uechi T, Okuno Y, Sato-Otsubo A, Kudo K, Kamimaki I, Kanezaki R, Shiraishi Y, Chiba K, Tanaka H, Terui K, Sato T, Iribe Y, Ohga S, Kuramitsu M, Hamaguchi I, Ohara A, Hara J, Goi K, Matsubara K, Koike K, Ishiguro A, Okamoto Y, Watanabe K, Kanno H, Kojima S, Miyano S, Kenmochi N, Ogawa S, Ito E Loss of function mutations in RPL27 and RPS27 identified by whole-exome sequencing in Diamond-Blackfan anaemia Br J Haematol. 2014 Nov 25. doi: 10.1111/bjh.13229. [Epub ahead of print] pubmed
Kawashima-Goto S, Imamura T, Seki M, Kato M, Yoshida K, Sugimoto A, Kaneda D, Fujiki A, Miyachi M, Nakatani T, Osone S, Ishida H, Taki T, Takita J, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Ogawa S, Hosoi H Identification of a homozygous JAK3 V674A mutation caused by acquired uniparental disomy in a relapsed early T-cell precursor ALL patient Int J Hematol. 2014 Nov 28. [Epub ahead of print] pubmed
Watanabe T, Kawakami E, Shoemaker JE, Lopes TJ, Matsuoka Y, Tomita Y, Kozuka-Hata H, Gorai T, Kuwahara T, Takeda E, Nagata A, Takano R, Kiso M, Yamashita M, Sakai-Tagawa Y, Katsura H, Nonaka N, Fujii H, Fujii K, Sugita Y, Noda T, Goto H, Fukuyama S, Watanabe S, Neumann G, Oyama M, Kitano H, Kawaoka Y Influenza virus-host interactome screen as a platform for antiviral drug development Cell Host Microbe. 2014 Dec 10;16(6):795-805. doi: 10.1016/j.chom.2014.11.002. Epub 2014 Nov 20 pubmed
Patil A, Nakai K TimeXNet: identifying active gene sub-networks using time-course gene expression profiles BMC Syst Biol. 2014;8 Suppl 4:S2. doi: 10.1186/1752-0509-8-S4-S2. Epub 2014 Dec 8 pubmed
Tani H, Imamachi N, Mizutani R, Imamura K, Kwon Y, Miyazaki S, Maekawa S, Suzuki Y, Akimitsu N Genome-wide analysis of long noncoding RNA turnover Methods Mol Biol. 2015;1262:305-20. doi: 10.1007/978-1-4939-2253-6_19 pubmed
Ito H, Shiwaku H, Yoshida C, Homma H, Luo H, Chen X, Fujita K, Musante L, Fischer U, Frints SG, Romano C, Ikeuchi Y, Shimamura T, Imoto S, Miyano S, Muramatsu SI, Kawauchi T, Hoshino M, Sudol M, Arumughan A, Wanker EE, Rich T, Schwartz C, Matsuzaki F, Bonni A, Kalscheuer VM, Okazawa H In utero gene therapy rescues microcephaly caused by Pqbp1-hypofunction in neural stem progenitor cells Mol Psychiatry. 2014 Jul 29. doi: 10.1038/mp.2014.69. [Epub ahead of print] pubmed
Barclay SS, Tamura T, Ito H, Fujita K, Tagawa K, Shimamura T, Katsuta A, Shiwaku H, Sone M, Imoto S, Miyano S, Okazawa H Systems biology analysis of Drosophila in vivo screen data elucidates core networks for DNA damage repair in SCA1 Hum Mol Genet. 2014 Mar 1;23(5):1345-64. doi: 10.1093/hmg/ddt524. Epub 2013 Oct 31 pubmed
Sugii M, Kawano K, Faure A, Matsuno H A Mathematical Analysis of the Behavior of Genetic Toggle Switch The 29th International Technical Conference on Circuit/Systems Computers and Communications, 845-848, 2014
Tran VA, Hirose O, Saethang T, Nguyen LA, Dang XT, Le TK, Ngo DL, Gavrilov S, Kubo M, Yamada Y, Sato K D-IMPACT: A Data Preprocessing Algorithm to Improve the Performance of Clustering Journal of Software Engineering and Applications Vol.7 No.8, 639-654, 2014
Sugii M, Kawano K, Matsuno H Extension of Genetic Toggle Switch with a Mathematical Analysis for Artificial Genetic Circuits Proc. The German Conference on Bioinformatics, 110, 2014
Hase T, Kikuchi K, Ghosh S, Kitano H, Tanaka H Identification of drug-target modules in the human protein protein interaction network Artificial Life and Robotics Vol.19 Issue.4, 406-413, 2014
ElGokhy SM, Shibuya T, Shoukry A Improving miRNA Classification Using an Exhaustive Set of Features Advances in Intelligent Systems and Computing Vol.294, 31-39, 2014
Nguyen LA, Dang XT, Le TK, Saethang T, Tran VA, Ngo DL, Gavrilov S, Nguyen NG, Kubo M, Yamada Y, Sato K Predicting Βeta-Turns and Βeta-Turn Types Using a Novel Over-Sampling Approach Journal of Biomedical Science and Engineering Vol.7 No.11, 927-940, 2014
Kawano S, Fujisawa H, Takada T, Shiroishi T Sparse principal component regression with adaptive loading arXiv:1402.6455
Ohtsuki T, Nariai N, Kojima K, Mimori T, Sato Y, Kawai Y, Yamaguchi-Kabata Y, Shibuya T, Nagasaki M SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints Lecture Notes in Computer Science Vol.8542, 208-219, 2014
内藤 雄樹 今日から使える！データベース・ウェブツール 達人になるための実践ガイド100 実験医学増刊号 Vol.32 No.20, 102-103, 2014
Yamanaka M Random Matrix Theory of Rigidity in Soft Matter Journal of the Physical Society of Japan Vol.84, 063801, 2015
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