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Results Achieved by Using the Supercomputer (Published Papers)
Published Papers List in 2013

Supercomputer

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Published Papers List in 2014.
Published Papers List in 2013.
Published Papers List in 2012.
Published Papers List in 2011.
Published Papers List in 2010.
Published Papers List in 2009.
Published Papers List in 2008.
Published Papers List before 2008.

Published Papers List in 2013

Author	Title	Journal/Book
Barclay SS, Tamura T, Ito H, Fujita K, Tagawa K, Shimamura T, Katsuta A, Shiwaku H, Sone M, Imoto S, Miyano S, Okazawa H	Systems biology analysis of Drosophila in vivo screen data elucidates core networks for DNA damage repair in SCA1	Hum Mol Genet. 2014 Mar 1;23(5):1345-64. doi: 10.1093/hmg/ddt524. Epub 2013 Oct 31
Becker H, Yoshida K, Blagitko-Dorfs N, Claus R, Pantic M, Abdelkarim M, Niemoller C, Greil C, Hackanson B, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Dohner K, Schnittger S, Henneke P, Niemeyer CM, Flotho C, Pfeifer D, Ogawa S, Lubbert M	Tracing the development of acute myeloid leukemia in CBL syndrome	Blood. 2014 Mar 20;123(12):1883-6. doi: 10.1182/blood-2013-10-533844. Epub 2014 Feb 3
Damm F, Chesnais V, Nagata Y, Yoshida K, Scourzic L, Okuno Y, Itzykson R, Sanada M, Shiraishi Y, Gelsi-Boyer V, Renneville A, Miyano S, Mori H, Shih LY, Park S, Dreyfus F, Guerci-Bresler A, Solary E, Rose C, Cheze S, Prebet T, Vey N, Legentil M, Duffourd Y, de Botton S, Preudhomme C, Birnbaum D, Bernard OA, Ogawa S, Fontenay M, Kosmider O	BCOR and BCORL1 mutations in myelodysplastic syndromes and related disorders	Blood. 2013 Oct 31;122(18):3169-77. doi: 10.1182/blood-2012-11-469619. Epub 2013 Sep 18
Elzawahry A, Patil A, Kumagai Y, Suzuki Y, Nakai K	Innate immunity interactome dynamics	Gene Regul Syst Bio. 2014 Jan 6;8:1-15. doi: 10.4137/GRSB.S12850. eCollection 2014
Fukunaga T, Ozaki H, Terai G, Asai K, Iwasaki W, Kiryu H	CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data	Genome Biol. 2014 Jan 21;15(1):R16
Furuta M, Kozaki K, Tanimoto K, Tanaka S, Arii S, Shimamura T, Niida A, Miyano S, Inazawa J	The tumor-suppressive miR-497-195 cluster targets multiple cell-cycle regulators in hepatocellular carcinoma	PLoS One. 2013;8(3):e60155. doi: 10.1371/journal.pone.0060155. Epub 2013 Mar 27
Gomez-Segui I, Makishima H, Jerez A, Yoshida K, Przychodzen B, Miyano S, Shiraishi Y, Husseinzadeh HD, Guinta K, Clemente M, Hosono N, McDevitt MA, Moliterno AR, Sekeres MA, Ogawa S, Maciejewski JP	Novel recurrent mutations in the RAS-like GTP-binding gene RIT1 in myeloid malignancies	Leukemia. 2013 Sep;27(9):1943-6. doi: 10.1038/leu.2013.179. Epub 2013 Jun 14
Haferlach T, Nagata Y, Grossmann V, Okuno Y, Bacher U, Nagae G, Schnittger S, Sanada M, Kon A, Alpermann T, Yoshida K, Roller A, Nadarajah N, Shiraishi Y, Shiozawa Y, Chiba K, Tanaka H, Koeffler HP, Klein HU, Dugas M, Aburatani H, Kohlmann A, Miyano S, Haferlach C, Kern W, Ogawa S	Landscape of genetic lesions in 944 patients with myelodysplastic syndromes	Leukemia. 2014 Feb;28(2):241-7. doi: 10.1038/leu.2013.336. Epub 2013 Nov 13
Hase T, Kikuchi K, Ghosh S, Kitano H, Tanaka H	Identification of drug-target modules in the human protein-protein interaction network	Proceedings of The Nineteenth International Symposium on Artificial Life and Robotics 2014 (AROB 19th 2014), 550-555, 2014
Hasegawa S, Imai K, Yoshida K, Okuno Y, Muramatsu H, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Kojima S, Ogawa S, Morio T, Mizutani S, Takagi M	Whole-exome sequence analysis of ataxia telangiectasia-like phenotype	J Neurol Sci. 2014 May 15;340(1-2):86-90. doi: 10.1016/j.jns.2014.02.033. Epub 2014 Mar 4
Hieno A, Naznin HA, Hyakumachi M, Sakurai T, Tokizawa M, Koyama H, Sato N, Nishiyama T, Hasebe M, Zimmer AD, Lang D, Reski R, Rensing SA, Obokata J, Yamamoto YY	ppdb: plant promoter database version 3.0	Nucleic Acids Res. 2014 Jan;42(Database issue):D1188-92. doi: 10.1093/nar/gkt1027. Epub 2013 Nov 4
Hira A, Yabe H, Yoshida K, Okuno Y, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Nakamura J, Kojima S, Ogawa S, Matsuo K, Takata M, Yabe M	Variant ALDH2 is associated with accelerated progression of bone marrow failure in Japanese Fanconi anemia patients	Blood. 2013 Oct 31;122(18):3206-9. doi: 10.1182/blood-2013-06-507962. Epub 2013 Sep 13
Hosono N, Makishima H, Jerez A, Yoshida K, Przychodzen B, McMahon S, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Sanada M, Gomez-Segui I, Verma AK, McDevitt MA, Sekeres MA, Ogawa S, Maciejewski JP	Recurrent genetic defects on chromosome 7q in myeloid neoplasms	Leukemia. 2014 Jan 16. doi: 10.1038/leu.2014.25
Imamachi N, Tani H, Mizutani R, Imamura K, Irie T, Suzuki Y, Akimitsu N	BRIC-seq: A genome-wide approach for determining RNA stability in mammalian cells	Methods. 2013 Jul 17. pii: S1046-2023(13)00263-6. doi: 10.1016/j.ymeth.2013.07.014
Imamura K, Imamachi N, Akizuki G, Kumakura M, Kawaguchi A, Nagata K, Kato A, Kawaguchi Y, Sato H, Yoneda M, Kai C, Yada T, Suzuki Y, Yamada T, Ozawa T, Kaneki K, Inoue T, Kobayashi M, Kodama T, Wada Y, Sekimizu K, Akimitsu N	Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli	Mol Cell. 2014 Feb 6;53(3):393-406. doi: 10.1016/j.molcel.2014.01.009
Ishikawa T, Shimizu T, Ueki A, Yamaguchi SI, Onishi N, Sugihara E, Kuninaka S, Miyamoto T, Morioka H, Nakayama R, Kobayashi E, Toyama Y, Mabuchi Y, Matsuzaki Y, Yamaguchi R, Miyano S, Saya H	Twist2 functions as a tumor suppressor in murine osteosarcoma cells	Cancer Sci. 2013 Jul;104(7):880-8. doi: 10.1111/cas.12163. Epub 2013 May 9
Kakiuchi M, Nishizawa T, Ueda H, Gotoh K, Tanaka A, Hayashi A, Yamamoto S, Tatsuno K, Katoh H, Watanabe Y, Ichimura T, Ushiku T, Funahashi S, Tateishi K, Wada I, Shimizu N, Nomura S, Koike K, Seto Y, Fukayama M, Aburatani H, Ishikawa S	Recurrent gain-of-function mutations of RHOA in diffuse-type gastric carcinoma	Nat Genet. 2014 Jun;46(6):583-7. doi: 10.1038/ng.2984. Epub 2014 May 11
Kasahara K, Kinoshita K	GIANT: pattern analysis of molecular interactions in 3D structures of protein-small ligand complexes	BMC Bioinformatics. 2014 Jan 14;15:12. doi: 10.1186/1471-2105-15-12
Katayama K, Yamaguchi R, Imoto S, Watanabe K, Miyano S	Analysis of questionnaire for traditional medicine and development of decision support system	Evid Based Complement Alternat Med. 2014;2014:974139. doi: 10.1155/2014/974139. Epub 2014 Jan 29
Katayama K, Yoshino T, Munakata K, Yamaguchi R, Imoto S, Miyano S, Watanabe K	Prescription of kampo drugs in the Japanese health care insurance program	Evid Based Complement Alternat Med. 2013;2013:576973. doi: 10.1155/2013/576973. Epub 2013 Nov 30
Kayano M, Imoto S, Yamaguchi R, Miyano S	Multi-omics approach for estimating metabolic networks using low-order partial correlations	J Comput Biol. 2013 Aug;20(8):571-82. doi: 10.1089/cmb.2013.0043
Kitamura K, Yoshida K, Shiraishi Y, Chiba K, Tanaka H, Furukawa K, Miyano S, Ogawa S, Kunishima S	Normal neutrophil myosin IIA localization in an immunofluorescence analysis can rule out MYH9 disorders	J Thromb Haemost. 2013 Nov;11(11):2071-3. doi: 10.1111/jth.12406
Kojima K, Nariai N, Mimori T, Takahashi M, Yamaguchi-Kabata Y, Sato Y, Nagasaki M	A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads	Bioinformatics. 2013 Nov 15;29(22):2835-43. doi: 10.1093/bioinformatics/btt503. Epub 2013 Sep 3
Kon A, Shih LY, Minamino M, Sanada M, Shiraishi Y, Nagata Y, Yoshida K, Okuno Y, Bando M, Nakato R, Ishikawa S, Sato-Otsubo A, Nagae G, Nishimoto A, Haferlach C, Nowak D, Sato Y, Alpermann T, Nagasaki M, Shimamura T, Tanaka H, Chiba K, Yamamoto R, Yamaguchi T, Otsu M, Obara N, Sakata-Yanagimoto M, Nakamaki T, Ishiyama K, Nolte F, Hofmann WK, Miyawaki S, Chiba S, Mori H, Nakauchi H, Koeffler HP, Aburatani H, Haferlach T, Shirahige K, Miyano S, Ogawa S	Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms	Nat Genet. 2013 Oct;45(10):1232-7. doi: 10.1038/ng.2731. Epub 2013 Aug 18
Kunishima S1, Okuno Y, Yoshida K, Shiraishi Y, Sanada M, Muramatsu H, Chiba K, Tanaka H, Miyazaki K, Sakai M, Ohtake M, Kobayashi R, Iguchi A, Niimi G, Otsu M, Takahashi Y, Miyano S, Saito H, Kojima S, Ogawa S	ACTN1 mutations cause congenital macrothrombocytopenia	Am J Hum Genet. 2013 Mar 7;92(3):431-8. doi: 10.1016/j.ajhg.2013.01.015. Epub 2013 Feb 21
Le TKT, Hirose O, Tran VA, Saethang T, Nguyen LAT, Dang XT, Ngo DL, Kubo M, Yamada Y, Sato K	Predicting residue contacts for protein-protein interactions by integration of multiple information	Journal of Biomedical Science and Engineering, Vol.7, No.1, 28-37, 2014
Liang KC, Suzuki Y, Kumagai Y, Nakai K	Analysis of changes in transcription start site distribution by a classification approach	Gene. 2014 Mar 1;537(1):29-40. doi: 10.1016/j.gene.2013.12.038. Epub 2013 Dec 31
Lin TL, Nagata Y, Kao HW, Sanada M, Okuno Y, Huang CF, Liang DC, Kuo MC, Lai CL, Lee EH, Shih YS, Tanaka H, Shiraishi Y, Chiba K, Lin TH, Wu JH, Miyano S, Ogawa S, Shih LY	Clonal leukemic evolution in myelodysplastic syndromes with TET2 and IDH1/2 mutations	Haematologica. 2014 Jan;99(1):28-36. doi: 10.3324/haematol.2013.091249. Epub 2013 Aug 30
Lopez Y, Patil A, Nakai K	Identification of novel motif patterns to decipher the promoter architecture of co-expressed genes in Arabidopsis thaliana	BMC Syst Biol. 2013 Oct 16;7 Suppl 3:S10. doi: 10.1186/1752-0509-7-S3-S10
Makishima H, Yoshida K, Nguyen N, Przychodzen B, Sanada M, Okuno Y, Ng KP, Gudmundsson KO, Vishwakarma BA, Jerez A, Gomez-Segui I, Takahashi M, Shiraishi Y, Nagata Y, Guinta K, Mori H, Sekeres MA, Chiba K, Tanaka H, Muramatsu H, Sakaguchi H, Paquette RL, McDevitt MA, Kojima S, Saunthararajah Y, Miyano S, Shih LY, Du Y, Ogawa S, Maciejewski JP	Somatic SETBP1 mutations in myeloid malignancies	Nat Genet. 2013 Aug;45(8):942-6. doi: 10.1038/ng.2696. Epub 2013 Jul 7
Makita Y, Nakai K	Bacillus subtilis transcriptional network	Bacterial Gene Regulation and Transcriptional Networks. Edited by Babu, M. M. (Caister Academic Press). pp.155-165, 2013
Matsui H, Misumi T, Kawano S	Model selection criteria for the varying-coefficient modelling via regularized basis expansions	DOI:10.1080/00949655.2013.785548
Morishima T, Sato N	The Plant and Protist Organellar DNA Replication Enzyme POP Showing Up in Place of DNA Polymerase Gamma May Be a Suitable Antiprotozoal Drug Target	InTech, Rijeka, Croatia, 287-311. ISBN 989-953-51-0991-4. doi: 10.5772/3433
Moriwaki Y, Terada T, Caaveiro JM, Takaoka Y, Hamachi I, Tsumoto K, Shimizu K	Heme binding mechanism of structurally similar iron-regulated surface determinant near transporter domains of Staphylococcus aureus exhibiting different affinities for heme	Biochemistry. 2013 Dec 10;52(49):8866-77. doi: 10.1021/bi4008325. Epub 2013 Nov 25
Nariai N, Hirose O, Kojima K, Nagasaki M	TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference	Bioinformatics. 2013 Sep 15;29(18):2292-9. doi: 10.1093/bioinformatics/btt381. Epub 2013 Jul 2
Niida A, Tremmel G, Imoto S, Miyano S	Multilayer cluster heat map visualizing biological tensor data	Lecture Notes in Bioinformatics. 8213: 116-125, 2013
Obayashi T, Okamura Y, Ito S, Tadaka S, Aoki Y, Shirota M, Kinoshita K	ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants	Plant Cell Physiol. 2014 Jan;55(1):e6. doi: 10.1093/pcp/pct178. Epub 2013 Dec 10
Oki T, Nishimura K, Kitaura J, Togami K, Maehara A, Izawa K, Sakaue-Sawano A, Niida A, Miyano S, Aburatani H, Kiyonari H, Miyawaki A, Kitamura T	A novel cell-cycle-indicator, mVenus-p27K-, identifies quiescent cells and visualizes G0-G1 transition	Sci Rep. 2014 Feb 6;4:4012. doi: 10.1038/srep04012
Onodera T, Sadakane K, Shibuya T	Detecting superbubbles in assembly graphs	Lecture Notes in Computer Science. 8126: 338-348, 2013
Onodera T, Shibuya T	The gapped spectrum kernel for support vector machines	Lecture Notes in Computer Science. 7988: 1-15, 2013
Osawa T, Tsuchida R, Muramatsu M, Shimamura T, Wang F, Suehiro J, Kanki Y, Wada Y, Yuasa Y, Aburatani H, Miyano S, Minami T, Kodama T, Shibuya M	Inhibition of histone demethylase JMJD1A improves anti-angiogenic therapy and reduces tumor-associated macrophages	Cancer Res. 2013 May 15;73(10):3019-28. doi: 10.1158/0008-5472.CAN-12-3231. Epub 2013 Mar 14
Park SJ, Komata M, Inoue F, Yamada K, Nakai K, Ohsugi M, Shirahige K	Inferring the choreography of parental genomes during fertilization from ultralarge-scale whole-transcriptome analysis	Genes Dev. 2013 Dec 15;27(24):2736-48. doi: 10.1101/gad.227926.113
Patil A, Kumagai Y, Liang KC, Suzuki Y, Nakai K	Linking transcriptional changes over time in stimulated dendritic cells to identify gene networks activated during the innate immune response	PLoS Comput Biol. 2013 Nov;9(11):e1003323. doi: 10.1371/journal.pcbi.1003323. Epub 2013 Nov 7
Saida S, Watanabe K, Sato-Otsubo A, Terui K, Yoshida K, Okuno Y, Toki T, Wang R, Shiraishi Y, Miyano S, Kato I, Morishima T, Fujino H, Umeda K, Hiramatsu H, Adachi S, Ito E, Ogawa S, Ito M, Nakahata T, Heike T	Clonal selection in xenografted TAM recapitulates the evolutionary process of myeloid leukemia in Down syndrome	Blood. 2013 May 23;121(21):4377-87. doi: 10.1182/blood-2012-12-474387. Epub 2013 Mar 12
Saito MM, Imoto S, Yamaguchi R, Sato H, Nakada H, Kami M, Miyano S, Higuchi T	Extension and verification of the SEIR model on the 2009 influenza A (H1N1) pandemic in Japan	Math Biosci. 2013 Nov;246(1):47-54. doi: 10.1016/j.mbs.2013.08.009. Epub 2013 Sep 4
Saito MM, Imoto S, Yamaguchi R, Tsubokura M, Kami M, Nakada H, Sato H, Miyano S, Higuchi T	Enhancement of collective immunity in Tokyo metropolitan area by selective vaccination against an emerging influenza pandemic	PLoS One. 2013 Sep 18;8(9):e72866. doi: 10.1371/journal.pone.0072866. eCollection 2013
Sakaguchi H1, Okuno Y, Muramatsu H, Yoshida K, Shiraishi Y, Takahashi M, Kon A, Sanada M, Chiba K, Tanaka H, Makishima H, Wang X, Xu Y, Doisaki S, Hama A, Nakanishi K, Takahashi Y, Yoshida N, Maciejewski JP, Miyano S, Ogawa S, Kojima S	Exome sequencing identifies secondary mutations of SETBP1 and JAK3 in juvenile myelomonocytic leukemia	Nat Genet. 2013 Aug;45(8):937-41. doi: 10.1038/ng.2698. Epub 2013 Jul 7
Sakata-Yanagimoto M, Enami T, Yoshida K, Shiraishi Y, Ishii R, Miyake Y, Muto H, Tsuyama N, Sato-Otsubo A, Okuno Y, Sakata S, Kamada Y, Nakamoto-Matsubara R, Tran NB, Izutsu K, Sato Y, Ohta Y, Furuta J, Shimizu S, Komeno T, Sato Y, Ito T, Noguchi M, Noguchi E, Sanada M, Chiba K, Tanaka H, Suzukawa K, Nanmoku T, Hasegawa Y, Nureki O, Miyano S, Nakamura N, Takeuchi K, Ogawa S, Chiba S	Somatic RHOA mutation in angioimmunoblastic T cell lymphoma	Nat Genet. 2014 Feb;46(2):171-5. doi: 10.1038/ng.2872. Epub 2014 Jan 12
Sasakura Y, Sierro N, Nakai K, Inaba K, Kusakabe TG	Genome structures, functional genomics, and proteomics in ascidians	Genome mapping and genomics in laboratory animals. Edited by Denny, P. & Kole, C. (Springer) pp.87-132, 2013
Sato Y, Yoshizato T, Shiraishi Y, Maekawa S, Okuno Y, Kamura T, Shimamura T, Sato-Otsubo A, Nagae G, Suzuki H, Nagata Y, Yoshida K, Kon A, Suzuki Y, Chiba K, Tanaka H, Niida A, Fujimoto A, Tsunoda T, Morikawa T, Maeda D, Kume H, Sugano S, Fukayama M, Aburatani H, Sanada M, Miyano S, Homma Y, Ogawa S	Integrated molecular analysis of clear-cell renal cell carcinoma	Nat Genet. 2013 Aug;45(8):860-7. doi: 10.1038/ng.2699. Epub 2013 Jun 24
Sharma A, Dehzangi A, Lyons J, Imoto S, Miyano S, Nakai K, Patil A	Evaluation of sequence features from intrinsically disordered regions for the estimation of protein function	PLoS One. 2014 Feb 24;9(2):e89890. doi: 10.1371/journal.pone.0089890. eCollection 2014
Sharma A, Paliwal KK, Dehzangi A, Lyons J, Imoto S, Miyano S	A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition	BMC Bioinformatics. 2013 Jul 24;14:233. doi: 10.1186/1471-2105-14-233
Sharma A, Paliwal KK, Imoto S, Miyano S	A feature selection method using improved regularized linear discriminant analysis	Mach Vis Appl. 25(3):775-786, 2014
Sharma A, Paliwal KK, Imoto S, Miyano S	Principal component analysis using QR decomposition	International J Machine Learning and Cybernetics. 4(6): 679-683, 2013
Shiraishi Y, Sato Y, Chiba K, Okuno Y, Nagata Y, Yoshida K, Shiba N, Hayashi Y, Kume H, Homma Y, Sanada M, Ogawa S, Miyano S	An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data	Nucleic Acids Res. 2013 Apr;41(7):e89. doi: 10.1093/nar/gkt126. Epub 2013 Mar 6
Takatsuno Y, Mimori K, Yamamoto K, Sato T, Niida A, Inoue H, Imoto S, Kawano S, Yamaguchi R, Toh H, Iinuma H, Ishimaru S, Ishii H, Suzuki S, Tokudome S, Watanabe M, Tanaka J, Kudo SE, Mochizuki H, Kusunoki M, Yamada K, Shimada Y, Moriya Y, Miyano S, Sugihara K, Mori M	The rs6983267 SNP is associated with MYC transcription efficiency, which promotes progression and worsens prognosis of colorectal cancer	Ann Surg Oncol. 2013 Apr;20(4):1395-402. doi: 10.1245/s10434-012-2657-z. Epub 2012 Sep 14
Yamaguchi K, Yamaguchi R, Takahashi N, Ikenoue T, Fujii T, Shinozaki M, Tsurita G, Hata K, Niida A, Imoto S, Miyano S, Nakamura Y, Furukawa Y	Overexpression of cohesion establishment factor DSCC1 through E2F in colorectal cancer	PLoS One. 2014 Jan 17;9(1):e85750. doi: 10.1371/journal.pone.0085750. eCollection 2014
Yamanaka M	Random Matrix Theory Analysis of Cross Correlations in Molecular Dynamics Simulations of Macro-Biomolecules	Journal of the Physical Society of Japan. 82:083801, 2013
Yokobori T, Iinuma H, Shimamura T, Imoto S, Sugimachi K, Ishii H, Iwatsuki M, Ota D, Ohkuma M, Iwaya T, Nishida N, Kogo R, Sudo T, Tanaka F, Shibata K, Toh H, Sato T, Barnard GF, Fukagawa T, Yamamoto S, Nakanishi H, Sasaki S, Miyano S, Watanabe T, Kuwano H, Mimori K, Pantel K, Mori M	Plastin3 is a novel marker for circulating tumor cells undergoing the epithelial-mesenchymal transition and is associated with colorectal cancer prognosis	Cancer Res. 2013 Apr 1;73(7):2059-69. doi: 10.1158/0008-5472.CAN-12-0326. Epub 2013 Feb 1
Yoshida K, Toki T, Okuno Y, Kanezaki R, Shiraishi Y, Sato-Otsubo A, Sanada M, Park MJ, Terui K, Suzuki H, Kon A, Nagata Y, Sato Y, Wang R, Shiba N, Chiba K, Tanaka H, Hama A, Muramatsu H, Hasegawa D, Nakamura K, Kanegane H, Tsukamoto K, Adachi S, Kawakami K, Kato K, Nishimura R, Izraeli S, Hayashi Y, Miyano S, Kojima S, Ito E, Ogawa S	The landscape of somatic mutations in Down syndrome-related myeloid disorders	Nat Genet. 2013 Nov;45(11):1293-9. doi: 10.1038/ng.2759. Epub 2013 Sep 22
Yoshimaru T, Komatsu M, Matsuo T, Chen YA, Murakami Y, Mizuguchi K, Mizohata E, Inoue T, Akiyama M, Yamaguchi R, Imoto S, Miyano S, Miyoshi Y, Sasa M, Nakamura Y, Katagiri T	Targeting BIG3-PHB2 interaction to overcome tamoxifen resistance in breast cancer cells	Nat Commun. 2013;4:2443. doi: 10.1038/ncomms3443
中井謙太	ENCODEプロジェクトの衝撃	生物物理 53(5): 272-273, 2013
渡邉之人, 瀬尾茂人, 竹中要一, 松田秀雄	複数時系列遺伝子発現プロファイルを利用した遺伝子制御ネットワーク推定の精度向上手法	情報処理学会論文誌数理モデル化と応用, 6(3):151-162, 2013
辻敏之	ビッグデータからの展開:古代タンパク質解析と超分子モデリング	生命のビッグデータ利用の最前線, CMC出版, ISBN: 978-4-7813-0537-0, 2014