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Supercomputer
Compute node Thin
Shirokane4 Compute node Thin
These 24-core Intel Xeon E5-2650 v4 CPUs equipped with 128 GB of memory constitute Shirokane4's group of compute nodes. The group is composed of 140 total nodes, and of those, two are equipped with an Xeon Phi 7210 as a manycore server for enhanced operating performance. Two further nodes are equipped with a NVIDIA Tesla K80, which allows GPGPU-based operation.
Server Specifications
| System name | Number of nodes | Device name | CPU/node | Memory /node |
|---|---|---|---|---|
| Compute node Thin | 136 | HP Apollo r2200 XL170r Gen9 × 136 | Intel Xeon E5-2650 v4 2.2GHz (12 CPU cores) × 2 (24 CPU cores) | 128 GB |
- Host name prefix
- yc
- UGE option for specific selection
- Specific selection is unnecessary. Calculations will be done by this node without any assignment.
qsub
To select a node equipped with a manycore
qsub -l knl
To select a node equipped with a GPGPU qsub -l gpgpu
Operational Period and Pictures
Operational Period and Pictures
April 2017 -
.
:
User's Guide.
- Supercomputer User's Guide
- Commercial/Private Use
- Fee for SHIROKANE
- Application Procedure for Initial Registration
- Applications
- Technical Support Services
- FAQ about Procedures
Usage, Workshop.
- Note for Users
- Workshop Schedule (News)
- Workshop Documents
- Supercomputer Wiki
- SHIROKANE Q&A
- Using Shirokane3
- Using Linux
- Using the Databases
- Using the Grid Engine (UGE)
- Hard Disk Crusher
- References on Bioinformatics
- Backup Policy
- FAQ
Results Achieved by the Supercomputer.
System Information.
Various Applications.
- Application for Software Upgrade
- Application for Software Installation
- The HGC Supercomputer License Certification Exam
